PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00294g00625.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 536aa    MW: 60745.5 Da    PI: 5.078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00294g00625.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-5061261121
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyW
  Peaxi162Scf00294g00625.1   6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPdKsLLPSKDMEWYFFSPRDRKYPNGTRTNRATKAGYW 89 
                               79****************************.99**************96435566888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                               katgkd++v s + + +g+kktLv+y+grap+g++t W
  Peaxi162Scf00294g00625.1  90 KATGKDRKVNS-QMRPIGMKKTLVYYRGRAPHGTRTGW 126
                               **********9.999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-544137IPR003441NAC domain
PROSITE profilePS5100550.2046155IPR003441NAC domain
PfamPF023654.2E-247126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPDKSLLPSK  60
DMEWYFFSPR DRKYPNGTRT NRATKAGYWK ATGKDRKVNS QMRPIGMKKT LVYYRGRAPH  120
GTRTGWDAYA LCRVFKKSLN AQKSGDHYAS AVSDRSSSID LYTDQGRYDD YNESSSNYGI  180
MPSAATSSSM VRVHGSPLNH DIAGPSDDKW MQYLSDEAFT FNNPSLTNNG TLPYLPSKVD  240
IALECARLQH RFALPPLEVQ DFPQVGYVDS RNMYSQSNDL IYQSTNQTDI VQEILSVAQA  300
SHDLTNQDSS WGGNYNYAAP VGDDFSFLPH NNQIHGFGNF DEDFKSESMV EKLRWVGMSE  360
NDIEKTFLED YKTVPIEDIT GPHKEEQELQ GEGSGQQNNF NELNETDGGN NLSLGFGNES  420
FLDNDEDTDG TFSSSPSFEV YEKIEVSQGM FNIATRQAAN TFYHRVVPSR TVRIQRNLVT  480
MHDSKAISQD ATFLDTFMAF SRKTLSGVMK VTWPWRGTVS TLVDMIAPLY SFFGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-48114312171NO APICAL MERISTEM PROTEIN
1ut4_B1e-48114312171NO APICAL MERISTEM PROTEIN
1ut7_A1e-48114312171NO APICAL MERISTEM PROTEIN
1ut7_B1e-48114312171NO APICAL MERISTEM PROTEIN
4dul_A1e-48114312171NAC domain-containing protein 19
4dul_B1e-48114312171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754415e-74HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765145.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016466987.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A1S3ZRK80.0A0A1S3ZRK8_TOBAC; NAC domain-containing protein 86-like
TrEMBLA0A1U7VT990.0A0A1U7VT99_NICSY; NAC domain-containing protein 78-like
STRINGXP_009765145.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14952348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-135NAC domain containing protein 28