PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00285g00230.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 284aa MW: 31666.4 Da PI: 7.1668

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00285g00230.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	125	172	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L++l+P + +k a++L + +++++sLq Peaxi162Scf00285g00230.1 125 SHSLAERARREKINARMKLLQDLVPGC----NKISGTAMVLDEIINHVQSLQ 172 8***********************9....89999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-15	119	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-9	119	176	No hit	No description
PROSITE profile	PS50888	14.659	121	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-16	121	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-7	125	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-9	127	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MQLLVQHNEE MDSAKLYNTP PLIFPSDAAL IDRASKFSVF AAGNSSSKSE FVKQELVDDS 60 DSNPNSSPAF SNPMVSPKNP KRKEREKKGK ESSKKSKKAA NDTSEDREKL PYVHVRARRG 120 QATDSHSLAE RARREKINAR MKLLQDLVPG CNKISGTAMV LDEIINHVQS LQRQVEFLSM 180 RLAAVNPRVD SNLDTFFAAE SGSAVESNFP GIAAPSIWPE GQSSVNRTSQ YQQLLNIDGF 240 HQPVWVREED NSSFLTPENS LLTYDSSVNS ASLHQNQLKM ELQM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780308.1	1e-135	PREDICTED: transcription factor bHLH48-like isoform X2
Refseq	XP_016505589.1	1e-135	PREDICTED: transcription factor bHLH48-like isoform X2
Swissprot	Q8VZ02	1e-70	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1S4CX42	1e-134	A0A1S4CX42_TOBAC; transcription factor bHLH48-like isoform X2
TrEMBL	A0A1U7WP00	1e-134	A0A1U7WP00_NICSY; transcription factor bHLH48-like isoform X2
STRING	XP_009780303.1	1e-133	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	4e-72	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]