PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00276g00412.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB

Protein Properties

Length: 982aa MW: 108500 Da PI: 5.1972

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00276g00412.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	49	95	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+++v+ +G + W+t+a+++ gR +kqc++rw+++l Peaxi162Scf00276g00412.1 49 KGSWTKEEDEILIELVNTYGAKKWSTVAQHLA-GRIGKQCRERWHNHL 95 799***************************.***********97 PP
2	Myb_DNA-binding	46.3	1e-14	101	143	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++ + gRt++ +k++w+ Peaxi162Scf00276g00412.1 101 KEAWTQEEELALIRAHQIYGNK-WAELSKVLL-GRTDNAIKNHWN 143 579*****************.****9.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.844	7	43	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	24	49	IPR009057	Homeodomain-like
PROSITE profile	PS51294	31.191	44	99	IPR017930	Myb domain
SuperFamily	SSF46689	5.62E-30	46	142	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-18	48	97	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-26	50	98	IPR009057	Homeodomain-like
CDD	cd00167	6.04E-16	51	95	No hit	No description
Pfam	PF13921	1.9E-18	52	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-20	99	150	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-15	100	148	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.603	100	150	IPR017930	Myb domain
CDD	cd00167	1.43E-11	103	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MERRTSGPKR RSRQWNAEEI LLAAECFNDR TDVQCLHRWQ KVLDPELVKG SWTKEEDEIL 60 IELVNTYGAK KWSTVAQHLA GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG 120 NKWAELSKVL LGRTDNAIKN HWNSSVKKKL DSYWASGLLA QFPSLSNINH QSQSIPSSSM 180 KLLHNSDDES VHQDGIVKEE VSECSQGSPL AGCSHCTSDW GNTFVHIREN DRMSEESLNK 240 NNASSSAAPC SRNYTPDFHD VSCSLPEVPT ELEDSKFLEH NYSHDLGNSI GKDWQFNRED 300 IPNISLEVIQ ESSGLFTHLL NCNENHNMVP FPLQTLTGFG TANAGNVVEG PYRPNEMFSS 360 VDGCRIIHPE EGISQCSPYE TGVNGNGAPE DSLIYQSSND LILETRDMAP QNCNASSLHD 420 FEASRHQAFS VHSQFSSENR SIVFGIASNH PLISPLENPI QESFTSGCDG FIYPSESAAP 480 ADNGTDNSFL ADRLDHTNDS CRLVSVNDLG STTSNTVQKG MLNENTFVPE EQKDGGALCY 540 EPPRFPSLDV PFLSCDLIQS GSDTQQEYSP LGIRQLMMAS ANCLTPLRLW DSPSRDDSPD 600 AILKSAAKTF TWTPSILKKR HRHLVTPLSE KRCEKRLEKD FNQESFSIMT AEFSRPQDMF 660 DQSANEKAST EDKENGHPSS EAGRKEEGDG VTGLSCCGNS ERRLDGGAHY RKEPHGKSAG 720 ANDGIGNVKQ PPGVLVELSS NDLFFSPDRV LVKCDRATSL SNKALANHYA RRLEAASKQV 780 TVSSSFETSC SSVGCSPAVH GKCRSSFVIA TSTALENTAE NSENGFRAET ESIFGETPFK 840 RSIESPSAWN SPWFMNSFLR SPRCEVELAF EDIALFMSPG DRSYDAIGLM KQLSEQTAAS 900 IADAHQILGN DTPETILLQT NSKKQKADEN CSLLTSNAVS ERRTLDFSEC GGTPPAKGKG 960 TTKFDSGTSF SSPSSYLLKC CR

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MERRTSGPKR RSRQWNAEEI LLAAECFNDR TDVQCLHRWQ KVLDPELVKG SWTKEEDEIL  60
IELVNTYGAK KWSTVAQHLA GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG  120
NKWAELSKVL LGRTDNAIKN HWNSSVKKKL DSYWASGLLA QFPSLSNINH QSQSIPSSSM  180
KLLHNSDDES VHQDGIVKEE VSECSQGSPL AGCSHCTSDW GNTFVHIREN DRMSEESLNK  240
NNASSSAAPC SRNYTPDFHD VSCSLPEVPT ELEDSKFLEH NYSHDLGNSI GKDWQFNRED  300
IPNISLEVIQ ESSGLFTHLL NCNENHNMVP FPLQTLTGFG TANAGNVVEG PYRPNEMFSS  360
VDGCRIIHPE EGISQCSPYE TGVNGNGAPE DSLIYQSSND LILETRDMAP QNCNASSLHD  420
FEASRHQAFS VHSQFSSENR SIVFGIASNH PLISPLENPI QESFTSGCDG FIYPSESAAP  480
ADNGTDNSFL ADRLDHTNDS CRLVSVNDLG STTSNTVQKG MLNENTFVPE EQKDGGALCY  540
EPPRFPSLDV PFLSCDLIQS GSDTQQEYSP LGIRQLMMAS ANCLTPLRLW DSPSRDDSPD  600
AILKSAAKTF TWTPSILKKR HRHLVTPLSE KRCEKRLEKD FNQESFSIMT AEFSRPQDMF  660
DQSANEKAST EDKENGHPSS EAGRKEEGDG VTGLSCCGNS ERRLDGGAHY RKEPHGKSAG  720
ANDGIGNVKQ PPGVLVELSS NDLFFSPDRV LVKCDRATSL SNKALANHYA RRLEAASKQV  780
TVSSSFETSC SSVGCSPAVH GKCRSSFVIA TSTALENTAE NSENGFRAET ESIFGETPFK  840
RSIESPSAWN SPWFMNSFLR SPRCEVELAF EDIALFMSPG DRSYDAIGLM KQLSEQTAAS  900
IADAHQILGN DTPETILLQT NSKKQKADEN CSLLTSNAVS ERRTLDFSEC GGTPPAKGKG  960
TTKFDSGTSF SSPSSYLLKC CR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	7e-56	9	150	18	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	7e-56	9	150	18	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546938.1	0.0	PREDICTED: myb-related protein 3R-1-like
TrEMBL	A0A1U8EI96	0.0	A0A1U8EI96_CAPAN; myb-related protein 3R-1-like
TrEMBL	A0A2G2YI29	0.0	A0A2G2YI29_CAPAN; Uncharacterized protein
STRING	Solyc11g071300.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3107	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	1e-174	Homeodomain-like protein