PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00274g00457.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41530 Da    PI: 6.1973
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00274g00457.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-22953145
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              kr e++s rqvt++kR++gilKKA+E+SvLCd+++ +++fs++gk
  Peaxi162Scf00274g00457.1  9 KRLESSSSRQVTYCKRKAGILKKANEISVLCDIDIILLMFSPSGK 53
                              689****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.759161IPR002100Transcription factor, MADS-box
CDDcd001201.40E-23257No hitNo description
SuperFamilySSF554558.24E-24289IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-17323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-191156IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRVRFNIKR LESSSSRQVT YCKRKAGILK KANEISVLCD IDIILLMFSP SGKPTLFKGE  60
RSKFDEIIAK FAQLTPQERA KRKLESLEVS LMFLARISPV SSWFLFLNPV ECNHNVLRKT  120
FKKLGHDIGV KEFLDASDPS VEELDNQVKV LRSRLTEVEK RLSWWTDPDM INKVEHLTQM  180
ECALRESLNA VHVQKLGDTT HLHLLMGREQ ERETHPLHPA NKSQHMPFPE APNSLPQEDR  240
RYSQDISIAT CSNVLNTGKE LEVDQARQAT TAVLDTSVFD DLTSIASLRE QLSEQYPYNL  300
YDSPNLLEKN LDSQSEINLE GYLMDHEVQR NFDLPRSVDS INSSWDSAAG TSTFPSFDEK  360
AYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233272.11e-164PREDICTED: agamous-like MADS-box protein AGL30
TrEMBLA0A3Q7FR611e-155A0A3Q7FR61_SOLLC; Uncharacterized protein
STRINGSolyc03g115910.1.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-63AGAMOUS-like 30