PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00274g00447.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Dof

Protein Properties

Length: 490aa MW: 53224.4 Da PI: 5.7151

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00274g00447.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	141	201	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ Peaxi162Scf00274g00447.1 141 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNNA 201 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	138	198	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-32	143	199	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	145	199	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	147	183	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MREVKEPEIK LFGKKIALPE NGIIIPVIVS GVGKLASSSG SDDDPCLLDK DESSDDGSEF 60 DKEEADKDQI TRELTEAKSE EKDQNQMMEE FENPKSPSTE SENKPKTPSM DDDDSAAVKS 120 SKAEDDQNDA TNSQQKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKSCQRYWT 180 AGGTMRNVPV GAGRRKNKNN ASHCRHIMIT DALQAARIDP PNGFHHQTFK PNGTVLSFGP 240 DSPLCDSMAS VLNLAEKKTP NGIQNGFYKL EHKNPSCIGG ENGDDCSSVS SVTTNSMVEG 300 VKNRPTEAVM QTINGFQSPV PCLPGVPWPF PFTAVPFPAI SPTGYPMPFC PPPYWNCSVP 360 GPLPGPWSIP WLTPPSPTAN QKGSGSAPTS PLGKHSRDGD LIKPNNSEGQ TNSEGSVLVP 420 KTLRIDDPDD AAKSSIWSTL GINYDSVSRG GLFKALQPKS SDKDHTATAS PAMQANPAAF 480 SRSLSFQERV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MREVKEPEIK LFGKKIALPE NGIIIPVIVS GVGKLASSSG SDDDPCLLDK DESSDDGSEF  60
DKEEADKDQI TRELTEAKSE EKDQNQMMEE FENPKSPSTE SENKPKTPSM DDDDSAAVKS  120
SKAEDDQNDA TNSQQKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKSCQRYWT  180
AGGTMRNVPV GAGRRKNKNN ASHCRHIMIT DALQAARIDP PNGFHHQTFK PNGTVLSFGP  240
DSPLCDSMAS VLNLAEKKTP NGIQNGFYKL EHKNPSCIGG ENGDDCSSVS SVTTNSMVEG  300
VKNRPTEAVM QTINGFQSPV PCLPGVPWPF PFTAVPFPAI SPTGYPMPFC PPPYWNCSVP  360
GPLPGPWSIP WLTPPSPTAN QKGSGSAPTS PLGKHSRDGD LIKPNNSEGQ TNSEGSVLVP  420
KTLRIDDPDD AAKSSIWSTL GINYDSVSRG GLFKALQPKS SDKDHTATAS PAMQANPAAF  480
SRSLSFQERV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364590.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	M1BQ21	0.0	M1BQ21_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	7e-91	cycling DOF factor 3