PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00273g00087.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 191aa    MW: 21617.3 Da    PI: 10.3843
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00273g00087.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.6e-1687132148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++++eE++l+++++  lG++ W+++a+ ++ gRt++++k+ w+++l
  Peaxi162Scf00273g00087.1  87 RGPFSEEEEKLIIQLHGILGNR-WAAVASQLP-GRTDNEIKNLWNTHL 132
                               89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-96994IPR009057Homeodomain-like
SuperFamilySSF466891.0E-2070139IPR009057Homeodomain-like
PROSITE profilePS5129424.93382136IPR017930Myb domain
SMARTSM007179.9E-1586134IPR001005SANT/Myb domain
PfamPF002494.4E-1587132IPR001005SANT/Myb domain
CDDcd001673.95E-1189132No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2295133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
FKFHPKDPKK ANVIVCALGN ICRHWQSLLL VSLLLLLAIE LCTLSVSLAF LDAVSTLKGP  60
EERNILLQCG KSCCLRWTNY LRPDIKRGPF SEEEEKLIIQ LHGILGNRWA AVASQLPGRT  120
DNEIKNLWNT HLKKRLFSMG IDPHTHEPSS VPSGLVRRPP TSSSTRHMAQ WGSARLQAEA  180
RLKIHIFRFP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-207013642108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629649.17e-67PREDICTED: transcription factor MYB80-like
RefseqXP_016458219.17e-67PREDICTED: transcription factor MYB122-like
SwissprotQ9M2D93e-61MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1J6KHW65e-66A0A1J6KHW6_NICAT; Transcription repressor myb5
STRINGXP_009629649.13e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-63myb domain protein 17