PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00271g00062.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ERF

Protein Properties

Length: 176aa MW: 19940 Da PI: 8.6655

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00271g00062.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.2	8.8e-18	98	148	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ r++lg++ t +Aa+a++ a+ k++g Peaxi162Scf00271g00062.1 98 HYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTYETDVDAARAYDCAAFKMRG 148 8******.******8542..4******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-31	97	156	IPR001471	AP2/ERF domain
CDD	cd00018	3.79E-30	97	156	No hit	No description
SMART	SM00380	2.3E-36	98	162	IPR001471	AP2/ERF domain
Pfam	PF00847	8.3E-13	98	148	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.447	98	156	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-23	98	157	IPR016177	DNA-binding domain
PRINTS	PR00367	4.4E-13	99	110	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-13	138	158	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:1902074	Biological Process	response to salt
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKTTIEDQEL TLELISQHLL GDFTSTESFI NSLDFCFSSL SDNYHYQPNN FDQDFPEFET 60 KPNITLSPVT SANTSASSNT TNDSSLNNNT VDDGKKKHYR GVRRRPWGKY AAEIRDPTRK 120 GSRVWLGTYE TDVDAARAYD CAAFKMRGRK AILNFPFDAG KSVPPANIGQ KRRRNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	9e-29	95	157	2	64	ATERF1
3gcc_A	9e-29	95	157	2	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ259603	0.0	HQ259603.1 Petunia x hybrida ethylene-responsive-element-binding factor 9 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804349.1	2e-82	PREDICTED: ethylene-responsive transcription factor ERF106
Refseq	XP_016491251.1	2e-82	PREDICTED: ethylene-responsive transcription factor ERF106-like
Swissprot	Q9LY05	1e-46	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	E3VVR8	1e-122	E3VVR8_PETHY; Ethylene-responsive-element-binding factor 9
STRING	XP_009804349.1	7e-82	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	7e-45	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]