PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00269g00088.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 330aa MW: 37817.5 Da PI: 6.432

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00269g00088.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G+g+W+ ++ g+ R++k+c++rw +yl Peaxi162Scf00269g00088.1 14 KGPWTPEEDHKLIQYIQVHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.278	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-23	11	97	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.27E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.9E-11	65	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.342	66	105	IPR017930	Myb domain
SMART	SM00717	0.01	66	103	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGRSPCCDKN GLKKGPWTPE EDHKLIQYIQ VHGPGNWRNL PKNAGLQRCG KSCRLRWTNY 60 LRPDIRRGRF SFEEEETIIQ LHSVLGNKTD NEIKNYWNTH IRKRLLRMGI DPVTHSPRLD 120 FLDLSSLLNS TQLNLSSLLG LQALVNPEIL KLANTLFLPH SENQELLLLK LQENQLLNPQ 180 HIQNSEGPEM LLQKLLQSQL VNSPLHNQSS IFQHNTNQIH NQIPEIPNCT QQNVSCSSSQ 240 SMQGNMGRYL MNGQIFQENM MLPPQNYSHT STPDASENST FQSLNNSSNQ NSQNFSFDTP 300 LSGTEEEKES YCSNFMKFEI PESLDFDDLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-20	12	105	2	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-20	12	105	25	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-20	12	105	2	105	C-Myb DNA-Binding Domain
1msf_C	1e-20	12	105	2	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244721	1e-51	AC244721.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-58o17 map 10, complete sequence.
GenBank	HG975449	1e-51	HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBank	HG975522	1e-51	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774387.1	1e-165	PREDICTED: transcription factor MYB34-like
Refseq	XP_016451723.1	1e-165	PREDICTED: transcription factor MYB34-like
Swissprot	Q9LDR8	2e-92	MY102_ARATH; Transcription factor MYB102
TrEMBL	A0A1S3YI60	1e-163	A0A1S3YI60_TOBAC; transcription factor MYB34-like
TrEMBL	A0A1U7W2V7	1e-163	A0A1U7W2V7_NICSY; transcription factor MYB34-like
STRING	XP_009774387.1	1e-164	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	5e-80	MYB-like 102

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]