PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00267g01022.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 326aa    MW: 36836 Da    PI: 8.0591
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00267g01022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.1e-08149955
                       AP2  9 dkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Peaxi162Scf00267g01022.1  1 HRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 49
                              789**********6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-9163IPR001471AP2/ERF domain
PROSITE profilePS5103215.396157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-8258IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-10258IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
HRWTGRYEAH LWDKSTWNQN QNKKGKQGAY DDEEAAARAY DLAALKYWGP GTLINFPVTD  60
YTRDLEEMQN VSREDYLASL RRKSGGFSRG ISKYRPLSSR WDLQCGRVPG ADYFNSLHYG  120
DDATVDNEYI GGFCMDRKID LSSYIKWWGG NKARQTDIHL KTSEETKVGC PEDIDNELRA  180
SELSIKQTEP YEMPRLGVNQ ERKNHKSSAF SAMSILSQSA AYKSLQEKVS KKKEKVENDE  240
NENKSTIIRL DRGKTIEKSS PDSGNERLGA AFLNIGGSSI NRNLHPLTPL LSAPLLTNYN  300
SIDPLTDPLL WTSLAPIFHT GSSRTA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783849.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-115AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U7XA860.0A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_009783849.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.14e-94AP2 family protein