PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00267g00714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LSD | ||||||||
Protein Properties | Length: 115aa MW: 12216.5 Da PI: 8.1694 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.2 | 2.6e-13 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ Peaxi162Scf00267g00714.1 7 CSGCRTILLYPRGATNVCCAVCNA 30 **********************98 PP | |||||||
2 | zf-LSD1 | 48.3 | 1.6e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRCa+C+tV Peaxi162Scf00267g00714.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 44.4 | 2.7e-14 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP GApsV+Ca+C+ Peaxi162Scf00267g00714.1 84 CGNCRTMLMYPCGAPSVKCAICQY 107 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.3E-13 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-11 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-17 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.5E-15 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT 60 SVRCACCHTV NLVPGPNQFA HVNCGNCRTM LMYPCGAPSV KCAICQYITH VNVSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 1e-39 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783613.1 | 1e-76 | PREDICTED: protein LOL2-like isoform X1 | ||||
Refseq | XP_016507388.1 | 1e-76 | PREDICTED: protein LOL2-like | ||||
Refseq | XP_016510524.1 | 1e-76 | PREDICTED: protein LOL2-like | ||||
Refseq | XP_019231807.1 | 1e-76 | PREDICTED: protein LOL2-like | ||||
Swissprot | Q0J7V9 | 5e-52 | LSD1_ORYSJ; Protein LSD1 | ||||
Swissprot | Q93ZB1 | 2e-52 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A1S4D229 | 3e-75 | A0A1S4D229_TOBAC; protein LOL2-like | ||||
TrEMBL | A0A1S4DBD8 | 3e-75 | A0A1S4DBD8_TOBAC; protein LOL2-like | ||||
TrEMBL | A0A1U7WYC9 | 3e-75 | A0A1U7WYC9_NICSY; protein LOL2-like isoform X1 | ||||
STRING | XP_009783613.1 | 4e-76 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-55 | lsd one like 1 |
Publications ? help Back to Top | |||
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