PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00258g00128.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 374aa    MW: 39611.4 Da    PI: 9.1858
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00258g00128.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP139.31e-4381155276
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                               CqvegCeadls++k y++rhkvC +hsk+pvv+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Peaxi162Scf00258g00128.1  81 CQVEGCEADLSDVKAYYSRHKVCATHSKSPVVIVAGIEQRFCQQCSRFHRLPEFDDGKRSCRRRLAGHNERRRKP 155
                               *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-3574142IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.32578155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.19E-4179159IPR004333Transcription factor, SBP-box
PfamPF031103.3E-3381154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MESASISGNS SSSPDSPPTG LKFGQKIYFE HVGLGVHNKS PSGSSSPVTG APAPASKKGR  60
SSGSGSGGGG GSIQGRQPPK CQVEGCEADL SDVKAYYSRH KVCATHSKSP VVIVAGIEQR  120
FCQQCSRFHR LPEFDDGKRS CRRRLAGHNE RRRKPPPGSL LSTRYGSLSS SIFENNSRSG  180
SFLVDFTAYP NLTEGAWPNT RLSERGWDNQ TTASGKYLQS PWLNSSENPT SELVLQGSAA  240
RATSYSGPGI PSRNCFTGVS DSGGALSLLS NESWGSRNQP SGLGVNSLVN TDGGHTVQPS  300
GSHAAPINFS GPPWGFKGNE ASSTSHDMPR NLGLGQLSHH AVNQYSAELG MPQHSGRQYL  360
ELEHSKGYDS SVQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-31811541184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732990.0LC073299.1 Nicotiana tabacum NtabSPL9b mRNA for squamosa promoter binding protein NtabSPL9b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243037.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A2K9ZXV10.0A0A2K9ZXV1_PETHY; Squamosa promoter binding-like protein 9a
STRINGXP_009792000.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-56squamosa promoter binding protein-like 9