PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00249g00718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 37247.8 Da PI: 5.7874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.1e-16 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+W AeI+d + ++ r +lg+++tae+Aa a+++a+ l+g Peaxi162Scf00249g00718.1 34 KFVGVRQRP-SGKWIAEIKDTT---QKIRMWLGTYDTAEDAASAYDQAAVLLRG 83 799******.7*********32...35**********************98887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.137 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-26 | 34 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-18 | 34 | 92 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.13E-28 | 34 | 90 | No hit | No description |
SMART | SM00380 | 6.5E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-10 | 34 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MEINFQKQLQ TEAIPIDKVT KFKGTKRSKT CTNKFVGVRQ RPSGKWIAEI KDTTQKIRMW 60 LGTYDTAEDA ASAYDQAAVL LRGSNTRTNF VTRVYENSHL ASRIKNLLNS KKIAKQTDST 120 SSTTSVTSLN VDNCSSPISS DDSNSSENMQ RSNIYEHSRV DELRVNETVL SFDQESQLFR 180 NTYKPDSDLG TSTFSVMSSS SFTSWGLEEG FEIGEGLLDF PKNVVSVSGE MGFTEFEIMK 240 VERQISASLY AVNGVQEYME SFHDPFESLW DQPLSNSCKG VQNLVGKKDN GLWKLLFSTT 300 YQSQVSILGP VGYGPTTLPL RHSDLMAVFC IVI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-15 | 35 | 94 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-15 | 35 | 94 | 6 | 66 | ATERF1 |
3gcc_A | 3e-15 | 35 | 94 | 6 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-64 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016495062.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A1S4C1N6 | 1e-110 | A0A1S4C1N6_TOBAC; ethylene-responsive transcription factor RAP2-11-like | ||||
STRING | XP_009599489.1 | 1e-105 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-28 | related to AP2 11 |