PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00249g00718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 333aa    MW: 37247.8 Da    PI: 5.7874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00249g00718.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-163483255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +g+W AeI+d +   ++ r +lg+++tae+Aa a+++a+  l+g
  Peaxi162Scf00249g00718.1 34 KFVGVRQRP-SGKWIAEIKDTT---QKIRMWLGTYDTAEDAASAYDQAAVLLRG 83
                              799******.7*********32...35**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.1373491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-263491IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-183492IPR016177DNA-binding domain
CDDcd000184.13E-283490No hitNo description
SMARTSM003806.5E-343497IPR001471AP2/ERF domain
PfamPF008475.0E-103479IPR001471AP2/ERF domain
PRINTSPR003675.8E-73546IPR001471AP2/ERF domain
PRINTSPR003675.8E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEINFQKQLQ TEAIPIDKVT KFKGTKRSKT CTNKFVGVRQ RPSGKWIAEI KDTTQKIRMW  60
LGTYDTAEDA ASAYDQAAVL LRGSNTRTNF VTRVYENSHL ASRIKNLLNS KKIAKQTDST  120
SSTTSVTSLN VDNCSSPISS DDSNSSENMQ RSNIYEHSRV DELRVNETVL SFDQESQLFR  180
NTYKPDSDLG TSTFSVMSSS SFTSWGLEEG FEIGEGLLDF PKNVVSVSGE MGFTEFEIMK  240
VERQISASLY AVNGVQEYME SFHDPFESLW DQPLSNSCKG VQNLVGKKDN GLWKLLFSTT  300
YQSQVSILGP VGYGPTTLPL RHSDLMAVFC IVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-153594363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-153594666ATERF1
3gcc_A3e-153594666ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-64HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495062.11e-112PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1S4C1N61e-110A0A1S4C1N6_TOBAC; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009599489.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-28related to AP2 11