PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00242g01318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 398aa MW: 45353.3 Da PI: 7.4302 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 99.3 | 5.5e-31 | 2 | 247 | 12 | 250 |
GRAS 12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPil 91 v+ +++ +a++lL+ ++ +s + +p+qR++ +++ AL+ r+ r++ + ++ + e ++++++e l++l P Peaxi162Scf00242g01318.1 2 VARKKFDRARKLLSLCKQSSSATENPVQRVVYHLADALQDRIDRETRLMPSSGeNDIEVHPNSVEEPLMSLYPavfaCKPEYPRC 86 788999**************************************77766666645556666666666665433432234456899 PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakf.Aeelgv 174 ++s+++ qaIl+++ +++r+H iDf+i+ G++W+ +lqa+a ++ + l+i +vg ++++ +g+r +++ Ae+l++ Peaxi162Scf00242g01318.1 87 QLSQFAGVQAILDSTRTARRIHLIDFGIKSGAHWIIFLQAFAGQDgCSLELLKISAVGT----CEKMIDDIGKRSSDYsAETLNI 167 ******************************************999445669********....9***********9975999*** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaV...nlvlqlhrlldesvsleserdevLklv...kslsPkvvvvveqeadhns 250 pf f++ ++++l ++ e+++++ +E++ n+ ++ + ++ +s++ r ++L+ sl+P ++vv+e ea++++ Peaxi162Scf00242g01318.1 168 PFCFKT-IVSDLMHFKKESFQLEGDEVVTFllqNSCIRPDAFQERVLSIRG-RGNLLRYSsldHSLNPCIMVVTEVEASTDA 247 ******.6999****************998233444555555555555555.9999985422379************99865 PP | |||||||
2 | GRAS | 27.8 | 3.1e-09 | 280 | 345 | 301 | 365 |
GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdr 365 g+er rh +le Wr+ + ++G+ + +ls + qa+lll+ + g ++e + ++l++ Wk+ Peaxi162Scf00242g01318.1 280 HGEERGPRHAKLEVWRKLFARFGLAESELSPSSLFQANLLLQWSQYAGlCSIEMDGKCLIFSWKGT 345 588999*************************************9966659*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.59 | 1 | 333 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-28 | 2 | 247 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-6 | 280 | 345 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MVARKKFDRA RKLLSLCKQS SSATENPVQR VVYHLADALQ DRIDRETRLM PSSGENDIEV 60 HPNSVEEPLM SLYPAVFACK PEYPRCQLSQ FAGVQAILDS TRTARRIHLI DFGIKSGAHW 120 IIFLQAFAGQ DGCSLELLKI SAVGTCEKMI DDIGKRSSDY SAETLNIPFC FKTIVSDLMH 180 FKKESFQLEG DEVVTFLLQN SCIRPDAFQE RVLSIRGRGN LLRYSSLDHS LNPCIMVVTE 240 VEASTDAEIL WIYLFLIFWK LALGETTARL KDYSKYNYYH GEERGPRHAK LEVWRKLFAR 300 FGLAESELSP SSLFQANLLL QWSQYAGLCS IEMDGKCLIF SWKGTLIDYV TLSIVFHLPP 360 RVTCNIAYSS PIELDIRKMQ KKLKKSDAES KMPEDSNF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160788.1 | 1e-101 | PREDICTED: scarecrow-like protein 28 | ||||
TrEMBL | M0ZMM4 | 9e-99 | M0ZMM4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003954 | 1e-99 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50650.1 | 2e-15 | GRAS family protein |