PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00235g00064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23975.8 Da PI: 8.2056 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8.2e-20 | 25 | 73 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g Peaxi162Scf00235g00064.1 25 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 73 8*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-12 | 24 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-35 | 24 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.26E-18 | 24 | 81 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-22 | 25 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-32 | 25 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MRRGRAAAAA VPAAVNGEMN GSIRFRGVRK RPWGRFAAEI RDPWKKTRVW LGTFDSAEDA 60 ARAYDAAART LRGPKAKTNF PLPHHPYNQS FNNNPNNEGF VNSRIYPQDN PVITQRPTSS 120 GMSSTVESFS GPRPPLLRQQ TVPSRKYPRS PPVVPDDCRS DCDSSSSVVV DGECDGDGEN 180 DVIVSSSFRK PLPFDLNLPP PMDDVDSDEL RCTELCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 24 | 88 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ259602 | 0.0 | HQ259602.1 Petunia x hybrida ethylene-responsive-element-binding factor 8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305578.1 | 2e-89 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 2e-76 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | E3VVR7 | 1e-157 | E3VVR7_PETHY; Ethylene-responsive-element-binding factor 8 | ||||
STRING | PGSC0003DMT400037359 | 8e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 8e-34 | ethylene responsive element binding factor 3 |