PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00232g00101.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 413aa MW: 47034.3 Da PI: 7.5257

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00232g00101.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	431.2	8e-132	33	413	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal..... 81 ++lL++cAe +s +d+++a++l++ ls+++sp gd+++Rl++ ft+AL+ rl+r + ++a ++s+ ++ + +e+l+ Peaxi162Scf00232g00101.1 33 RQLLISCAELISRSDFSAANRLITILSTNSSPFGDSTERLVHQFTRALSLRLNRYIISSSSATATSSVTPLHNVENLSTNdssla 117 89**************************************************5555555554444444443333333323333 PP GRAS 82 ..kl....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159 + +++v+P+++fs+ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R +pp+lRiTg g+ + ++l+ Peaxi162Scf00232g00101.1 118 llQSsylsLNQVTPFIRFSQLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLR 197 33115567*******************998799*******************9.999******....** PP GRAS 160 etgerLakfAeelgvpfefnvl.vakrledlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 +tg+rLakfA++lg++f+f++l ++++ +d ++ +++ + p+E+laVn+v+ lhr+l+++ +l+ +L+ +ks++Pkvv+ Peaxi162Scf00232g00101.1 198 RTGDRLAKFAHSLGLRFQFHPLlITNNENDHDPsiiSSILLLPDETLAVNCVFYLHRILKDREKLRV----FLHRIKSMNPKVVT 278 *****************9644455555550015556777************88888888....********** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 v+e+ea+hn++ Fl+rf+eal+yy+a+fdslea+lp+ s+er++vE++++grei ++va+eg++r+erhe++++W+ +l+++GF+ Peaxi162Scf00232g00101.1 279 VAEREANHNHPLFLQRFVEALDYYAAVFDSLEATLPPSSRERMTVEQVWFGREIIDIVAAEGEKRKERHERFRSWEVMLRSCGFS 363 ********************************************************************************* PP GRAS 326 pvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vpls +a +qaklllr ++ s+gy++ s+s++lgW+++pL+s+S+Wr Peaxi162Scf00232g00101.1 364 NVPLSPFALSQAKLLLRLHYpSEGYQLRVLSNSFFLGWQNQPLFSISSWR 413 ***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.932	6	392	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-129	33	413	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MLGSFGSSSQ SHDEEDEHHQ RPRFTTSPAI QIRQLLISCA ELISRSDFSA ANRLITILST 60 NSSPFGDSTE RLVHQFTRAL SLRLNRYIIS SSSATATSSV TPLHNVENLS TNDSSLALLQ 120 SSYLSLNQVT PFIRFSQLTA NQAILEAIND NQQAIHIVDF DINHGVQWPP LMQALADRYP 180 PPTLRITGTG NDLDTLRRTG DRLAKFAHSL GLRFQFHPLL ITNNENDHDP SIISSILLLP 240 DETLAVNCVF YLHRILKDRE KLRVFLHRIK SMNPKVVTVA EREANHNHPL FLQRFVEALD 300 YYAAVFDSLE ATLPPSSRER MTVEQVWFGR EIIDIVAAEG EKRKERHERF RSWEVMLRSC 360 GFSNVPLSPF ALSQAKLLLR LHYPSEGYQL RVLSNSFFLG WQNQPLFSIS SWR

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MLGSFGSSSQ SHDEEDEHHQ RPRFTTSPAI QIRQLLISCA ELISRSDFSA ANRLITILST  60
NSSPFGDSTE RLVHQFTRAL SLRLNRYIIS SSSATATSSV TPLHNVENLS TNDSSLALLQ  120
SSYLSLNQVT PFIRFSQLTA NQAILEAIND NQQAIHIVDF DINHGVQWPP LMQALADRYP  180
PPTLRITGTG NDLDTLRRTG DRLAKFAHSL GLRFQFHPLL ITNNENDHDP SIISSILLLP  240
DETLAVNCVF YLHRILKDRE KLRVFLHRIK SMNPKVVTVA EREANHNHPL FLQRFVEALD  300
YYAAVFDSLE ATLPPSSRER MTVEQVWFGR EIIDIVAAEG EKRKERHERF RSWEVMLRSC  360
GFSNVPLSPF ALSQAKLLLR LHYPSEGYQL RVLSNSFFLG WQNQPLFSIS SWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-64	39	412	26	378	Protein SCARECROW
5b3h_A	5e-64	39	412	25	377	Protein SCARECROW
5b3h_D	5e-64	39	412	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765072.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-136	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A1S3XTB6	0.0	A0A1S3XTB6_TOBAC; scarecrow-like protein 18
TrEMBL	A0A1U7VAL7	0.0	A0A1U7VAL7_NICSY; scarecrow-like protein 18
STRING	XP_009765072.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-133	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]