PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00231g00335.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | CPP | ||||||||
Protein Properties | Length: 587aa MW: 63644.9 Da PI: 8.0843 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44 | 4.5e-14 | 128 | 166 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 + k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e Peaxi162Scf00231g00335.1 128 KPKQCNCKHSRCLKLYCECFASGIYCDG-CNCANCNNNIE 166 5699************************.********976 PP | |||||||
2 | TCR | 50.9 | 3.2e-16 | 212 | 251 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeCf+a+ Cse+CkC +CkN e Peaxi162Scf00231g00335.1 212 KHNKGCNCKKSGCLKKYCECFQANILCSENCKCVECKNFE 251 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.4E-14 | 127 | 167 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.378 | 128 | 252 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.4E-11 | 130 | 164 | IPR005172 | CRC domain |
SMART | SM01114 | 1.0E-18 | 212 | 253 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.7E-13 | 215 | 250 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MEKSEGGDFP PKKEQSEPTT SGHVSMDNST KKLARQLDFT GGSVSAPTTA AAAKPESCKP 60 IQIQQQVIRP QLQKQTQAPQ HIVMMPMQQQ LQTSLLPPHP SIRPSKPESP KARSRQSASE 120 AKDGTPKKPK QCNCKHSRCL KLYCECFASG IYCDGCNCAN CNNNIENEAA RREAIEATLM 180 RNPNAFRPKI ASSPHGAREN REEAGDGLVL AKHNKGCNCK KSGCLKKYCE CFQANILCSE 240 NCKCVECKNF EGSEERQALC HGDHGNNITH LQQAANAAIT GAVGSSGFGS PPVNKKRKAQ 300 DLFFGSMIKD PVHRLGQFQQ TDQINASAPP SSLSPTPGPR VGNAGGLGPS KFTYRSLLAD 360 LIQPQDIKEL CSVLVVYARE AAKMLADERD ASVKQAKCQS EASIPSSGVE KVMRDDCSSD 420 FQPGNIRADE STLDGADVSK DRPMSPGTLA LMCDEKDTIF TAPPPPSNDL ASLSYNTSSQ 480 PPHEQGMTEI YPELERIVLT QTRDCLKKLI TLGEIKGNQN DMNNGLAMTD SRNQHEPFSN 540 GVAKTVPPPP LKTSQMVDPA TAAANKSQFP KVHPPDYNTD VKTNNLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-31 | 126 | 261 | 10 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-31 | 126 | 261 | 10 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595592.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-174 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1U7VWI3 | 0.0 | A0A1U7VWI3_NICSY; protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
STRING | XP_009766310.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-153 | Tesmin/TSO1-like CXC domain-containing protein |