PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00228g00914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 38901.9 Da PI: 7.482 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.7e-18 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Peaxi162Scf00228g00914.1 35 RGPWTVEEDFALMNYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 82 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Peaxi162Scf00228g00914.1 88 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 131 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.329 | 30 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-31 | 32 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-11 | 37 | 82 | No hit | No description |
SMART | SM00717 | 1.3E-14 | 87 | 135 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.707 | 87 | 137 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.9E-15 | 88 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-23 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.12E-7 | 108 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDHHHHVKVG SSHGGGANCN KNNQQQHDED MDLRRGPWTV EEDFALMNYI AHHGEGRWNS 60 LARCAGLKRT GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR 120 TDNEIKNYWR TRVQKHAKQL KCDVNSKQFK DTMRYLWMPR LVERIQAAAA NNTTNSNNPS 180 KSQMVHQTIN SNMSGMSEFV PIHDNVVSTN KPRLMSTENS STAAASSENS FGTQVSPVNS 240 DLTDCCYNYP PVNQDYFQVS HHQSTTNNDQ LCHGESLTSP TGYFHHGTGL DQFQGMDQQQ 300 NMNSSQWMDG GNNFSDSLWN IDDMWFLQQQ LNNNNNNIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 32 | 129 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253478.1 | 1e-158 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 2e-96 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A1J6IUC8 | 1e-156 | A0A1J6IUC8_NICAT; Transcription factor myb108 | ||||
STRING | XP_009612140.1 | 1e-155 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 6e-89 | myb domain protein 78 |
Publications ? help Back to Top | |||
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