PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00228g00224.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 880aa    MW: 99081.5 Da    PI: 6.2869
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00228g00224.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.23.6e-731184744367
                      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                               lL + Ae++s+++ + a++lL+  ++ asp+g+++qR++ y+ eAL++r+ +++  l    p   +++ +  e+  ++++ +++ 
  Peaxi162Scf00228g00224.1 118 LLQASAEMFSKRHYAHARELLSLCNQSASPTGTSVQRVVYYYGEALRERIDKETGALPPNRPEGGKEKPSDLEVKPFVSVCYQLP 202
                               677789*********************************************9333333222222222222444444555567777 PP

                      GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA.ee 171
                                ++++++++  qaIl+ v+++ rvH iDf i+ G +W+ L+qaLa++   +   l+iT+vg     sk+   e+g+rL++fA e+
  Peaxi162Scf00228g00224.1 203 LFFRVAQFAGIQAILDNVKSAGRVHLIDFRIKSGSHWIILMQALANQGdCPLELLKITAVGT----SKDLADEIGQRLSSFAaEN 283
                               789******************************************987345559********....9**************7367 PP

                      GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               ++ pf+f++ v++++  l+ + +++++ E+++V     l  +l+ +++le     +L++vksl+P v++v++ +a++n++sF+er
  Peaxi162Scf00228g00224.1 284 MKFPFSFKA-VVSEMRHLTKDLFDLDTSEVVVVYAEQCLGGMLAWPHHLEA----FLRFVKSLNPCVMIVIDTDANTNAPSFMER 363
                               9********.7999*****************************88888887....****************************** PP

                      GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                               f+eal  ++a+fd le+ + ++++ r+++E +  ++ i n+++ eg+er+ r+ +le Wr+ + ++G k+ +ls+   +qa+l+ 
  Peaxi162Scf00228g00224.1 364 FSEALFLHAAFFDILETCMKQNNQYRMVIEGHKARKGIHNMITSEGEERTFRNVRLEIWRALFAKFGIKETELSDPSLDQANLMA 448
                               ************************************************************************************* PP

                      GRAS 342 rkvksdgyrveeesgslvlgWkdrpL 367
                               ++ +    +++ +++ l++ Wk+ p+
  Peaxi162Scf00228g00224.1 449 ERSSPGSCTLDMDEKGLIIKWKGTPI 474
                               ***95559***************997 PP
2GRAS268.81.8e-825058764374
                      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..... 83 
                               lL + Ae++s+++++ a+++L+  ++ +s++++p++R++++f+eAL++r+ ++++ + +  + ++ s   ++e ++  ++     
  Peaxi162Scf00228g00224.1 505 LLQASAEMFSNQQFKHARKYLSLCNQPVSSTDSPVKRVVHCFAEALRQRIDKETTPITRLPQDRPGSF--EVEPIHPEEFfmspk 587
                               57788***********************************************8888886655555543..333333332222223 PP

                      GRAS  84 .....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetg 162
                                     +++ P++ ++ ++  q Il+ v++ +r+H iDf+i+ G +W  L+qaLa+R   +   l+iT+vg     sk+++e +g
  Peaxi162Scf00228g00224.1 588 pyviaSYQALPFFCVALFAGIQVILDNVKSGRRLHLIDFGIKSGSHWTILMQALADRGdCPLELLKITAVGT----SKQAIEDVG 668
                               34556899*************************************************9444559********....9******** PP

                      GRAS 163 erLakfA.eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                               +rL++fA e+++ pf+f++ v++++ dl+ + +++++ E++aV   ++l r+l  + +     ++vL+++ksl P v+vv++ ea
  Peaxi162Scf00228g00224.1 669 QRLSSFAaENIKFPFSFKA-VVSEIRDLRKDLFEIDSSEVVAVYTYYRLGRMLTCPDQ----LEAVLRFIKSLDPCVMVVIDTEA 748
                               ******73579********.7999****************************954444....556******************** PP

                      GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                               ++n+++F erf eal ++sa+fdsle+ ++r++++ri +E+ +l++ i nv++ eg+er+ r+ +le Wr+ + ++G k++++se
  Peaxi162Scf00228g00224.1 749 NTNAPTFIERFNEALFFHSAVFDSLESCMGRDNQDRIAIEELILRKIIHNVITSEGEERTFRNVRLEIWRSLFAKFGIKELEISE 833
                               ************************************************************************************* PP

                      GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +   qa+ll ++++    +++ + + l++ Wk+ p++++SaW+
  Peaxi162Scf00228g00224.1 834 SSLYQANLLAERYAPGSCTLDMDGKGLIIKWKGTPIMFTSAWK 876
                               **************5559************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.37389461IPR005202Transcription factor GRAS
PfamPF035141.2E-70118474IPR005202Transcription factor GRAS
PROSITE profilePS5098540.999476856IPR005202Transcription factor GRAS
PfamPF035146.2E-80505876IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MDSSLAKATT KGKEQMQSSH CAEEKKENSC LLFASYRILQ KYYHGGEPNE RHCDVSSNKK  60
TGSHVPSTVS IFEMARAQLL QYTSTKKEDD FTSIFSNPPI ADCSLSPKDS DDLELALLLQ  120
ASAEMFSKRH YAHARELLSL CNQSASPTGT SVQRVVYYYG EALRERIDKE TGALPPNRPE  180
GGKEKPSDLE VKPFVSVCYQ LPLFFRVAQF AGIQAILDNV KSAGRVHLID FRIKSGSHWI  240
ILMQALANQG DCPLELLKIT AVGTSKDLAD EIGQRLSSFA AENMKFPFSF KAVVSEMRHL  300
TKDLFDLDTS EVVVVYAEQC LGGMLAWPHH LEAFLRFVKS LNPCVMIVID TDANTNAPSF  360
MERFSEALFL HAAFFDILET CMKQNNQYRM VIEGHKARKG IHNMITSEGE ERTFRNVRLE  420
IWRALFAKFG IKETELSDPS LDQANLMAER SSPGSCTLDM DEKGLIIKWK GTPIAFDDCS  480
IASNSLHAHC GLSAEASEDL EIAFLLQASA EMFSNQQFKH ARKYLSLCNQ PVSSTDSPVK  540
RVVHCFAEAL RQRIDKETTP ITRLPQDRPG SFEVEPIHPE EFFMSPKPYV IASYQALPFF  600
CVALFAGIQV ILDNVKSGRR LHLIDFGIKS GSHWTILMQA LADRGDCPLE LLKITAVGTS  660
KQAIEDVGQR LSSFAAENIK FPFSFKAVVS EIRDLRKDLF EIDSSEVVAV YTYYRLGRML  720
TCPDQLEAVL RFIKSLDPCV MVVIDTEANT NAPTFIERFN EALFFHSAVF DSLESCMGRD  780
NQDRIAIEEL ILRKIIHNVI TSEGEERTFR NVRLEIWRSL FAKFGIKELE ISESSLYQAN  840
LLAERYAPGS CTLDMDGKGL IIKWKGTPIM FTSAWKFHHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3212387527378Protein SCARECROW
5b3h_A2e-3212387526377Protein SCARECROW
5b3h_D2e-3212387526377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169309.10.0PREDICTED: DELLA protein RGL3-like
TrEMBLM1BZ590.0M1BZ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1712335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-49RGA-like 2