PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00228g00113.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 264aa    MW: 30377.5 Da    PI: 9.5084
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00228g00113.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS60.92.6e-19145260259374
                      GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                                 ++y+ +l+ sl +  +++++ r++ E  +l++   n+++ceg+er+ r+ +l  Wr+ +e++G k+ +lse    qa+l+  +
  Peaxi162Scf00228g00113.1 145 TIMKYFFSLLHSLITCKGQDNRYRMTFEGLILRKIMYNMITCEGEERTFRNARLVAWRALFENFGIKEQELSEASLYQANLMAVR 229
                               5689*********8888*************9999999*********************************************999 PP

                      GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  d  +++ + + l++ Wk+ p+++vS+W+
  Peaxi162Scf00228g00113.1 230 STHDFCTLDMDGKGLMIKWKETPIMFVSSWK 260
                               999999************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.8011240IPR005202Transcription factor GRAS
PfamPF035149.1E-17145260IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAMQHSIKQ QLDAVLVQCW EGIARATVAS AMRAEMAAMQ HSIKQQLDAV LVQCWEGIAR  60
ATVASGQRLS SFAAENMKFP FTFKAVVSEM RPLTKDLFDL DTVSRRHVSM ARSPGSFSKI  120
REKPQSLLIV VIGIEQILTR QFLWTIMKYF FSLLHSLITC KGQDNRYRMT FEGLILRKIM  180
YNMITCEGEE RTFRNARLVA WRALFENFGI KEQELSEASL YQANLMAVRS THDFCTLDMD  240
GKGLMIKWKE TPIMFVSSWK FHHD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253877.12e-68PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1J6I2105e-67A0A1J6I210_NICAT; Della protein rgl1
STRINGPGSC0003DMT4000562295e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1835944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-11RGA-like 2