PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00228g00112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 126aa MW: 14409.4 Da PI: 9.2202 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 21.5 | 2.5e-07 | 27 | 80 | 5 | 57 |
GRAS 5 LlecA.eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 Ll++ e++s+++ +a++lL+ ++ sp+g+++qR + ++ eAL++r+ +++ Peaxi162Scf00228g00112.1 27 LLQASdEMFSKRHYGRARKLLSLCNQSTSPTGTSVQREVYFYGEALRERIDKET 80 555551456777888***********************************9932 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.8E-5 | 27 | 80 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MARTQLLQYT SKKEDDFISD DLELALLLQA SDEMFSKRHY GRARKLLSLC NQSTSPTGTS 60 VQREVYFYGE ALRERIDKET GALPPTDPKV VKRNHLFGSE TFCKCMLSVT AFRPSGSIRW 120 NLSNLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169309.1 | 1e-25 | PREDICTED: DELLA protein RGL3-like | ||||
TrEMBL | M1BZ59 | 3e-24 | M1BZ59_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056229 | 5e-25 | (Solanum tuberosum) |