PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00228g00111.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 685aa    MW: 77442.3 Da    PI: 6.0748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00228g00111.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1028.5e-327175194366
                      GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                               L+ +  E+++V + + l  +l+ +     + +++L++vks++P v++v++ ea++n+++F++rf+e l  ++a+fd le+ + ++
  Peaxi162Scf00228g00111.1   7 LSKDLLEVVVVYSEHCLGGMLAWPD----HLEAFLRFVKSVNPCVMIVIDTEANTNAPTFMDRFSEVLFLHAAVFDILESCMKQN 87 
                               5555568888888888888885555....5555**************************************************** PP

                      GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                               ++ r+++E +  +  i n+++ eg+er+ r+ +le Wr+ + + G k+ +ls+   +qa+l+ ++ +    +++ +++ l++ Wk
  Peaxi162Scf00228g00111.1  88 NHYRMVIEGHKARMVIHNMITSEGEERTFRNVRLEIWRALFAKIGIKETELSNPSLDQANLMAKRSSPSSCTLDMDEKGLIIKWK 172
                               *******************************************************************777*************** PP

                      GRAS 364 drp 366
                               + p
  Peaxi162Scf00228g00111.1 173 GTP 175
                               987 PP
2GRAS268.71.9e-822516214373
                      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalkl 83 
                               lL + Ae +s+++++ a+++L+  ++ as +g+p+qRl+ +f eAL++ + ++++++ +    ++    +     ++e+l     
  Peaxi162Scf00228g00111.1 251 LLQASAERFSNQQFKHARKFLSLCNQSASATGTPVQRLVYCFGEALREIIDKETKSITSLPLDRPGGF-ElepidHEEVLL---C 331
                               677889**********************************************8888886543333222.223222333333...1 PP

                      GRAS  84 .......fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeelee 160
                                       ++  P++++++++  qaIl+ v+ e+r+H iDf+i+ G +W+ L+qaLa+R   +   l+iT+vg     sk+++e 
  Peaxi162Scf00228g00111.1 332 pkphviaCYQELPFFQVAQFAGIQAILDNVKLERRLHLIDFGIKSGSHWIILMQALANRGdCPLELLKITAVGT----SKQMIED 412
                               233556677888***********************************************9444559********....9****** PP

                      GRAS 161 tgerLakf.AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                               +g+rL++f Aee++vpf+f++ v++++ +l+ + +++++ Ea+aV   ++l  +l+ + +le     vL+++ksl+P v+vv++ 
  Peaxi162Scf00228g00111.1 413 IGQRLSSFvAEEMKVPFSFKA-VVSEMRNLSKDLFEIDSTEAVAVYTDYRLAGMLAWPDHLEA----VLRFIKSLNPCVMVVIDT 492
                               ******9879***********.7999****************************966666665....****************** PP

                      GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                               ea++n+++F+erf eal  y+a+fdsl++ ++++++ r+ vE  +l++ i n++a eg+er+ r+ +le Wr+ ++++G k+ +l
  Peaxi162Scf00228g00111.1 493 EANTNAPTFMERFNEALFLYAAVFDSLQTCMGQNNQYRMAVEGLILRKIIHNMIASEGEERIFRNVRLEVWRALFDKFGIKETEL 577
                               ************************************************************************************* PP

                      GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               se+   qa+ll ++++    ++e + + +++ Wk+ +++++SaW
  Peaxi162Scf00228g00111.1 578 SESSLYQAHLLAERTAPGSCSLEMDGKGFIIKWKGTSILFASAW 621
                               ****************5559************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.6411163IPR005202Transcription factor GRAS
PfamPF035143.0E-297175IPR005202Transcription factor GRAS
PROSITE profilePS5098540.265222602IPR005202Transcription factor GRAS
PfamPF035146.5E-80251621IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MSEMRHLSKD LLEVVVVYSE HCLGGMLAWP DHLEAFLRFV KSVNPCVMIV IDTEANTNAP  60
TFMDRFSEVL FLHAAVFDIL ESCMKQNNHY RMVIEGHKAR MVIHNMITSE GEERTFRNVR  120
LEIWRALFAK IGIKETELSN PSLDQANLMA KRSSPSSCTL DMDEKGLIIK WKGTPSVQLH  180
LGNLKERDYD IPCNNCSGSH VPSTVSIIEM ARSQLHHYTS KKPNCSIASN SLDADCGLSP  240
EASEDLELAF LLQASAERFS NQQFKHARKF LSLCNQSASA TGTPVQRLVY CFGEALREII  300
DKETKSITSL PLDRPGGFEL EPIDHEEVLL CPKPHVIACY QELPFFQVAQ FAGIQAILDN  360
VKLERRLHLI DFGIKSGSHW IILMQALANR GDCPLELLKI TAVGTSKQMI EDIGQRLSSF  420
VAEEMKVPFS FKAVVSEMRN LSKDLFEIDS TEAVAVYTDY RLAGMLAWPD HLEAVLRFIK  480
SLNPCVMVVI DTEANTNAPT FMERFNEALF LYAAVFDSLQ TCMGQNNQYR MAVEGLILRK  540
IIHNMIASEG EERIFRNVRL EVWRALFDKF GIKETELSES SLYQAHLLAE RTAPGSCSLE  600
MDGKGFIIKW KGTSILFASA WNLCNLSASP TGTPVQRVVY WFGEAHRERI DKEIGKLPHN  660
KPEEKPFDLE EVMLTQKPFL LLCCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-3325662227379Protein SCARECROW
5b3h_A7e-3325662226378Protein SCARECROW
5b3h_D7e-3325662226378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169309.10.0PREDICTED: DELLA protein RGL3-like
TrEMBLM1BZ590.0M1BZ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1712335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-42RGA-like protein 3