PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00225g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 150aa MW: 16609.6 Da PI: 6.5276 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.1 | 1.1e-18 | 11 | 58 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i ++ r vtfskRr+g++KKA+EL ++++a+va ++fs+tgk y+ Peaxi162Scf00225g00024.1 11 KKITKDTSRMVTFSKRRQGLFKKASELETMTGARVATVVFSPTGKPYT 58 679999**************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.194 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-24 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-21 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-15 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-23 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.50E-20 | 18 | 60 | No hit | No description |
PRINTS | PR00404 | 2.6E-15 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-15 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MGTGKKKIDI KKITKDTSRM VTFSKRRQGL FKKASELETM TGARVATVVF SPTGKPYTSG 60 NVSYAIERHF CGSTDQPSSS HYYSSIDDVS GGSSTSNSAS RNGLYDWLED IDVEECQNLN 120 ELLLLKEQLE GTRKNLASVE DSESFQALFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581849.1 | 2e-63 | PREDICTED: agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A2G3BTX0 | 7e-64 | A0A2G3BTX0_CAPCH; Agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009796162.1 | 2e-61 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-14 | AGAMOUS-like 29 |