PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00222g00521.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 289aa    MW: 31907.7 Da    PI: 8.3084
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00222g00521.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.2e-0889120132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                               rg W + Ed +l+++v+ +G+ +W++Ia ++ 
  Peaxi162Scf00222g00521.1  89 RGHWRPAEDAKLKELVAIYGPQNWNLIADKLR 120
                               899*************************9985 PP
2Myb_DNA-binding56.94.6e-18131174146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Peaxi162Scf00222g00521.1 131 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 174
                               678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006988127IPR001005SANT/Myb domain
PfamPF002499.1E-789119IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-2289172IPR009057Homeodomain-like
PROSITE profilePS500905.91289119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-1490132IPR009057Homeodomain-like
PROSITE profilePS5129427.288126180IPR017930Myb domain
SMARTSM007172.1E-14130178IPR001005SANT/Myb domain
PfamPF002491.5E-14131173IPR001005SANT/Myb domain
CDDcd001677.86E-12133173No hitNo description
Gene3DG3DSA:1.10.10.605.1E-21133179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTSYSCSPMG TTTTTTSMGM FYADMNSLSI TSINYVTSDG GVGENSNETI DLNASCCFNE  60
EKQITMHSNF SSGNNGKEIE SGQSKLCARG HWRPAEDAKL KELVAIYGPQ NWNLIADKLR  120
WFNQLDPRIN RRAFTEEEEE RLMAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY  180
REQSSAYRRR KMGQFVYRRT TTSLVEEEDS SFVSSNSSSG KEVVAATMKG ENPTPIISGQ  240
TAANPFASLK INNDGPSGWV VYGPNGSSHM AASAGEAAPP STNVIVGMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25871795107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833311e-111HG983331.1 Nicotiana benthamiana mRNA for SANT/HTH Myb transcription factor (SANT/HTH Myb gene), clone 3890.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781411.11e-134PREDICTED: transcription factor MYB86-like
RefseqXP_016456515.11e-134PREDICTED: transcription factor MYB86-like
TrEMBLA0A1S3YWT31e-132A0A1S3YWT3_TOBAC; transcription factor MYB86-like
TrEMBLA0A1U7WVR61e-133A0A1U7WVR6_NICSY; transcription factor MYB86-like
STRINGXP_009781411.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-67myb domain protein 105