PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00222g00057.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Dof

Protein Properties

Length: 457aa MW: 50310.5 Da PI: 7.272

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00222g00057.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.8e-39	123	183	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss Peaxi162Scf00222g00057.1 123 PDKLIPCPRCNSMETKFCYYNNYNVNQPRYFCKKCQRYWTAGGTMRNVPVGSGRRKNKSSS 183 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	120	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.258	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MSEIGDSEIK LFGKTIGMTH EKGLVNITTS STTTTTTCVH HHDHPSSPIS TTSNEYKMIS 60 EGEFTQSKQE NELTGPTEDS FTEPETSSGI SDGTKIQDAD KETQSPKSIK NEDQSEEKAL 120 KKPDKLIPCP RCNSMETKFC YYNNYNVNQP RYFCKKCQRY WTAGGTMRNV PVGSGRRKNK 180 SSSTSNYHHL NVSDALQVAQ FEAAHGMHLP ALRANGTVLT FGSDKPLCDS MVSALNLADK 240 SQSSTANRFH GSEQRMPSSC GGKDIGNDQS NGPCSTSSIL QEQANNSGNF QAFHPQLPYF 300 QGQPWPYSGY PVSFYPAAPY WGCTVASPWN VPWLSSDLSI DHSSPTSPTL GKHTRDGSML 360 NQSQSGRGDT VQEREAERSV LTPKTLRIHD PNEAAKSSIW STLGIKNDKI DSVHGARLFK 420 AFNHKADHRN HESDASLVLQ ANPAAMSRSL NFRESTQ

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MSEIGDSEIK LFGKTIGMTH EKGLVNITTS STTTTTTCVH HHDHPSSPIS TTSNEYKMIS  60
EGEFTQSKQE NELTGPTEDS FTEPETSSGI SDGTKIQDAD KETQSPKSIK NEDQSEEKAL  120
KKPDKLIPCP RCNSMETKFC YYNNYNVNQP RYFCKKCQRY WTAGGTMRNV PVGSGRRKNK  180
SSSTSNYHHL NVSDALQVAQ FEAAHGMHLP ALRANGTVLT FGSDKPLCDS MVSALNLADK  240
SQSSTANRFH GSEQRMPSSC GGKDIGNDQS NGPCSTSSIL QEQANNSGNF QAFHPQLPYF  300
QGQPWPYSGY PVSFYPAAPY WGCTVASPWN VPWLSSDLSI DHSSPTSPTL GKHTRDGSML  360
NQSQSGRGDT VQEREAERSV LTPKTLRIHD PNEAAKSSIW STLGIKNDKI DSVHGARLFK  420
AFNHKADHRN HESDASLVLQ ANPAAMSRSL NFRESTQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355111.1	0.0	PREDICTED: cyclic dof factor 1 isoform X1
TrEMBL	M1BKM3	0.0	M1BKM3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400047370	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-90	cycling DOF factor 2