PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00207g01542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 40220.1 Da PI: 4.4585 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.7e-18 | 95 | 144 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++ +++++g Peaxi162Scf00207g01542.1 95 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 144 69*******.**********954...3************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-22 | 95 | 154 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-37 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 95 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 95 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.15E-32 | 95 | 153 | No hit | No description |
Pfam | PF00847 | 5.0E-11 | 96 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MCGGAIISDL VPPSRTSRRL TADLLWGSSD LKKNPSNYHS KPLRSSKFID LDDEFEADFQ 60 DFSDDIKPFG SKSVKSADAN CEEADKSSKR KRRNQYRGIR QRPWGKWAAE IRDPRKGIRV 120 WLGTFNSAEE AARAYDVEAR RIRGNKAKVN FPDETPVSAS RRTVKQNPQK VEESSNTVQL 180 NTNFFNNLDS GCYDSLDFVE EKPTAKQYAY EDVCFTAGDM GLGSFSPSAG ADVYFTSDEG 240 SNTFDCSDFG WGEPGSRTPE ISSVLSAVAE SNGTQFDEDA SPAKRLKSCT NNSVQDDGNT 300 VDKLSEELSA FESQMKFLQI PYLEGNWDAS VDTLLNADAT QEVGNAMDLW SFDDVPSLMG 360 GVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-21 | 95 | 152 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ259597 | 0.0 | HQ259597.1 Petunia x hybrida ethylene-responsive-element-binding factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605490.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_016515225.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | E3VVR2 | 0.0 | E3VVR2_PETHY; Ethylene-responsive-element-binding factor 3 | ||||
STRING | XP_009605490.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-73 | related to AP2 12 |