PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00207g00528.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 159aa    MW: 18321.7 Da    PI: 7.5059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00207g00528.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18753252
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52
                              +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ 
  Peaxi162Scf00207g00528.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARL 53
                              69******9.**********8.....334*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.72E-34663No hitNo description
SuperFamilySSF541711.05E-20765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-33764IPR001471AP2/ERF domain
PfamPF008473.5E-11752IPR001471AP2/ERF domain
PROSITE profilePS5103220.587764IPR001471AP2/ERF domain
SMARTSM003805.1E-39770IPR001471AP2/ERF domain
PRINTSPR003672.4E-11819IPR001471AP2/ERF domain
PRINTSPR003672.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLICGPRAR  60
TNFHYNDTDN SQSSCTKFLS SALIAKLQRC NMTSLNVSKR PKLEVQENRG DGIVKRNGQM  120
GIEAESTQEF KPLEDHHIEQ MIEELLDYGS IELCSVLQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15863662ATERF1
3gcc_A1e-15863662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419114e-56BT141911.1 Medicago truncatula clone JCVI-FLMt-4B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233959.11e-89PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-64ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1J6KWD23e-88A0A1J6KWD2_NICAT; Ethylene-responsive transcription factor erf003
STRINGXP_009771954.11e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-55ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]