PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00204g00217.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bZIP

Protein Properties

Length: 373aa MW: 41649.3 Da PI: 5.8611

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00204g00217.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.5	2.2e-11	86	127	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeN 42 + +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ e Peaxi162Scf00204g00217.1 86 PTDKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQLEQ 127 5799***************************73455554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-8	82	131	No hit	No description
SMART	SM00338	2.6E-6	85	145	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-7	87	124	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	87	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-6	89	128	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-28	176	250	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MNSSTYTQFV ASKRMGLCDP IHQIGMWGDF KGSSFPNSSA TLILEVENCL ENEMPIMEKL 60 LGNEIEEPSH GTVGTSNRYE PQTSKPTDKV RRRLAQNREA ARKSRLRKKA YVQQLENSKL 120 KLLQLEQELE RAKQQGMYVG GGLDASQIDY SGTANSGIAA FEMEYGHWVE EQNKQTDDLR 180 SALHSQIGEI ELRILVEGCL SHYFDLFRMK ATAANADVLY LMSGTWKTSA ERFFFWIGGF 240 RPSELLKVLL PHLEPLTEQQ VGEVCNLTQS CQQAEDALSQ GMVKLHQILS EAVAAGTLGD 300 GSILPQMTAT IEKLEALVRF VNQADHLRQE TLLQMSCILT THQSAQGLLA LGEYFKRLRA 360 LSSLWANGPS ESA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MNSSTYTQFV ASKRMGLCDP IHQIGMWGDF KGSSFPNSSA TLILEVENCL ENEMPIMEKL  60
LGNEIEEPSH GTVGTSNRYE PQTSKPTDKV RRRLAQNREA ARKSRLRKKA YVQQLENSKL  120
KLLQLEQELE RAKQQGMYVG GGLDASQIDY SGTANSGIAA FEMEYGHWVE EQNKQTDDLR  180
SALHSQIGEI ELRILVEGCL SHYFDLFRMK ATAANADVLY LMSGTWKTSA ERFFFWIGGF  240
RPSELLKVLL PHLEPLTEQQ VGEVCNLTQS CQQAEDALSQ GMVKLHQILS EAVAAGTLGD  300
GSILPQMTAT IEKLEALVRF VNQADHLRQE TLLQMSCILT THQSAQGLLA LGEYFKRLRA  360
LSSLWANGPS ESA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X82544	0.0	X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001305473.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	Q43647	0.0	Q43647_SOLTU; Leucine zipper transcription factor
STRING	Solyc04g054320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-140	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]