PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00203g01315.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 361aa    MW: 40695.3 Da    PI: 6.9678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00203g01315.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172875148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+lv+ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Peaxi162Scf00203g01315.1 28 RGLWSPEEDEKLVRHITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 75
                              788*******************************************97 PP
2Myb_DNA-binding52.31.3e-1681124146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Peaxi162Scf00203g01315.1  81 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 124
                               89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-251977IPR009057Homeodomain-like
PROSITE profilePS5129417.8542375IPR017930Myb domain
SuperFamilySSF466895.62E-2925122IPR009057Homeodomain-like
SMARTSM007174.4E-132777IPR001005SANT/Myb domain
PfamPF002492.9E-152875IPR001005SANT/Myb domain
CDDcd001671.23E-113175No hitNo description
PROSITE profilePS5129425.97776130IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2578131IPR009057Homeodomain-like
SMARTSM007171.5E-1580128IPR001005SANT/Myb domain
PfamPF002492.8E-1581124IPR001005SANT/Myb domain
CDDcd001677.06E-1283123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MKTCAVRDSD EKDKGMGHHC CSKQKVKRGL WSPEEDEKLV RHITTHGHGC WSSVPKLAGL  60
QRCGKSCRLR WINYLRPDLR RGSFTEQEER TIIDVHRILG NRWAQIAKHL PGRTDNEVKN  120
FWNSCIKKKL IAQGLDPNTH NLLSTHQNKN NKTNNSSKTK SYHQDSTSVF TIDTSTNKEV  180
ISMDIKATLA ALPPFLHSNN NTSSTYHYTT PIVPIIEYQN PSTFTLSERN NNGSTTTQHS  240
VLDFASNTSI NSTTNNVSSS TLTPLEFGYI NENCMWAGTG LEPTTLNPAT GGTEEMQVQL  300
QGEQFPIQTK FCDQEDVYKV NQTVENTFDN SNFDFDFVDS ALVPCGLYNS VNSMDQLSWD  360
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30281307108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589329.10.0PREDICTED: transcription factor MYB86-like isoform X1
TrEMBLA0A1S3ZUK40.0A0A1S3ZUK4_TOBAC; transcription factor MYB86-like isoform X1
STRINGXP_009589329.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-85myb domain protein 67