PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00196g00322.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 457aa    MW: 50650.6 Da    PI: 6.7674
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00196g00322.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.7e-10217271153
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                               s y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+a++ a++k+
  Peaxi162Scf00196g00322.1 217 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARAYDLAALKK 271
                               57*******************88885555446666.7799999**********986 PP
2AP252.21.5e-16280331155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Peaxi162Scf00196g00322.1 280 SKYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 331
                               89****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.18E-13217270No hitNo description
SuperFamilySSF541714.25E-9217272IPR016177DNA-binding domain
PfamPF008472.4E-7217271IPR001471AP2/ERF domain
PROSITE profilePS5103213.222218270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-6218270IPR001471AP2/ERF domain
SMARTSM003804.4E-6218273IPR001471AP2/ERF domain
PRINTSPR003672.8E-6219230IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18280340IPR016177DNA-binding domain
CDDcd000183.51E-12280339No hitNo description
PfamPF008471.4E-10280331IPR001471AP2/ERF domain
PROSITE profilePS5103219.401281339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18281339IPR001471AP2/ERF domain
SMARTSM003808.6E-32281345IPR001471AP2/ERF domain
PRINTSPR003672.8E-6321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAPENNWLSF SLSSMEMLNS SSQSSMLQSN LSSSTDSHHY YFADNFYPHG WSNPKPQVIY  60
SEGENHVNEV TRQNMNNNSF GFQGYMDSQI HQQSQPKLED FLGNDFRYSD SQTDTQDSSL  120
THIYHDHQDL KSIAAGFQTF STNSGSEVED SASVGRTTQV MGGDQFIESG NELGFSQCAT  180
GALSLAVNNT HSSQKAVVAV ESESCKKISD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC  240
KREGQARKGR QGGYDKEDKA ARAYDLAALK KSSGFSRGAS KYRGVTRHHQ QGRWQARIGR  300
VAGNKDLYLG TFATEEEAAE AYDIAAIKFR GVNAVTNFEM NRYDVEAIMK SALPVGGAAK  360
RLKLSLESEQ KLSLCNNQQI QSNSTDNHSI SFGAMPHISP IPYGVPFDTA APYYHHNFFH  420
QLHTNNAGAS DASGAITTMA AAMPTLNSPA ELFFWPH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603183.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-145AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J6IE040.0A0A1J6IE04_NICAT; Ap2-like ethylene-responsive transcription factor ail6
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-119AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]