PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00194g00213.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 705aa    MW: 75848.7 Da    PI: 6.4656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00194g00213.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16426472455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Peaxi162Scf00194g00213.1 426 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 472
                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.34E-17418476No hitNo description
Gene3DG3DSA:4.10.280.101.5E-20419480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-20419485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13426472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
PENDLVELVW ENGQIMMQGQ SSSAKKSPTS NNLPSISPRD RDRYMGNSST SKIGKFGVMD  60
SMLNDMPLSV PAGELDLLQE DEGVPWLGYS EQQDYCAQLL PEISGMTATE PSRQNEFVLM  120
DKRGSTDQVI GDSHSVPSHN AMNYEQRNTS KVSPSSRFSL LSSLVPQKGH TSSLSLEPGV  180
SDIFSSRTSN NPVSVFGESS PSQASAGDVR SITIRKQNMP ESSSGLLNFS HFSRPGTFVK  240
AAKLPNIAGG LNVSGSSTFE EKGNREGENV TNSNNNVSAA AVENFLSSKK ENHYPTNVVS  300
SQLESRASGA SFHDRSCPVE QSDDVFTDCS KNNDNTPAQL TGAKATKDIA NGERNVEHGV  360
ACSSVCSGSS AERGSSDRPH NLKRKTRDIE ESGSRSEDIE EESVGIKKAC PTRGGTGSKR  420
SRAAEVHNLS ERRRRDRINE KMRALQELIP NCNKADKASM LDEAIEYLKT LQLQVQIMSM  480
GAGMCVPPMM FPTGMQHMHA TQMRHFSPMG LGMGMGMGMG FGMGMLEMNG RSPGCPIFPM  540
PPFQGAHFPS PPIPASTAYP GTAGSNPHAF AHPGQGLPMP IPRASRAPLA GQLSTSSAVS  600
LNVPRAGVPI DMLSAPPILD SKNPVNKNNS KIEHNVEPSC PINQTCSQVQ ATNKVLEKSA  660
SLQKNDQLPD VTDSAANNLT NQIDVPASEA GEYRLDKTHD IQLIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430435ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358519.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_015169448.10.0PREDICTED: transcription factor PIF3-like
TrEMBLM1BK410.0M1BK41_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000470790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-48phytochrome interacting factor 3