PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00191g00114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 171aa MW: 18855.2 Da PI: 4.9374 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+eyss Peaxi162Scf00191g00114.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 49.1 | 2.4e-17 | 59 | 115 | 34 | 90 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 + R++ Ge+L+ Ls++eLqqLe+ Le +l ++ ++K + ++++i++lq+k e++++ Peaxi162Scf00191g00114.1 59 SSRQMRGEELQGLSIEELQQLERTLEAGLGRVIERKGDKIMREINQLQQKVMEISNN 115 67*************************************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.487 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-36 | 2 | 60 | No hit | No description |
SuperFamily | SSF55455 | 1.2E-28 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.336 | 39 | 130 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.4E-13 | 59 | 113 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS 60 RQMRGEELQG LSIEELQQLE RTLEAGLGRV IERKGDKIMR EINQLQQKVM EISNNGYKNP 120 AAAVVAVELE NAANEEGQSS ESVTNACNST GPPQDDDSSD TSLKLGLPYS G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 7e-20 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ666098 | 1e-104 | FJ666098.1 Petunia x hybrida EXTRAPETALS mRNA, complete cds. | |||
GenBank | GU129907 | 1e-104 | GU129907.1 Petunia x hybrida MADS-box protein 20 (PMADS20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783886.1 | 4e-98 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
Swissprot | Q9FUY6 | 7e-78 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | D1MBJ9 | 1e-108 | D1MBJ9_PETHY; EXTRAPETALS | ||||
STRING | XP_009783886.1 | 2e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-68 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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