PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00190g00087.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 541aa    MW: 60391 Da    PI: 7.851
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00190g00087.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-16741135
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Peaxi162Scf00190g00087.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                              ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.4E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-11445No hitNo description
CDDcd002023.40E-16654No hitNo description
Gene3DG3DSA:3.30.50.104.4E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003209.9E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139192.8E-9285378IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGKHGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY  60
RVSRVKNMSL KNKEAKVLKR KLNHGTTEVR TPPDYYQGFL KGFDEDTSNR SSSGSAISNS  120
ESYAQFGSTE ASDLTGPAQS NVWDATVPSR KRTCVSRPKQ SSVEKLTKDL YTILHEQQSS  180
YFFGSSEEDL LFESDKPMVS VEIGHGSVLI RHPNSISREE ESEASSLSVD NKRHCINESY  240
SRLTTPHVNI NKGVYLPNLG TERTKKPASQ GMEQNQIKRD KDHLEKLQIL GHHKSPLCHI  300
DMKDVLNYEE FMRQCSSDEQ QQLLKYLAPV DSCAPPDSLK SMFESSHFEE NLSHFQKLLA  360
EGVFDNSLSG VKIEDSRSLK KLILCYLTKS KWVEKYNLLK DAKCNSSASG YEAGVPSGIG  420
TGHSVNVKKP LERHHPKTAG AMNTMKSPKM MMMMMKNSYE QKELVDNNNS CFRPKSLFAS  480
PCNSSPLLDP LHFASESFDQ DLLLDVPSNS SFPQAELLQP TSSIAAKAST SSSCIYPHLV  540
G
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-139HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263527.10.0PREDICTED: GATA transcription factor 26 isoform X2
SwissprotQ8W4H11e-145GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A314L7K00.0A0A314L7K0_NICAT; Gata transcription factor 26
STRINGXP_009626897.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-138GATA transcription factor 26