PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00189g00318.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 627aa MW: 70877 Da PI: 7.0928

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00189g00318.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.4	5.1e-28	67	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk+++dgkw+v+++ +eHn Peaxi162Scf00189g00318.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDTG---TSRRPSVKKTDCKASMHVKRKRDGKWYVHEFIKEHN 148 **************************************999887...7788899************************* PP FAR1 87 Helap 91 Hel p Peaxi162Scf00189g00318.1 149 HELLP 153 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-25	67	153	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MVDQGDVVQS SLQVIGDMVD AADKAGHNRD GGVTRSPKRS TTGVEGNADF EPHDGIEFES 60 HEAAYTFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD TGTSRRPSVK 120 KTDCKASMHV KRKRDGKWYV HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGNQES VTDEQFDLRW WKMVSRFELQ ENEWMHTLYE DRKKWVPASM 240 RGSFLAGMST AQRSESVNSF FDKYIHKKIS LKEFLRQYGM ILQSRYEEEA VADFDTLHKQ 300 PALKSPSPWE KQMSTIYTHA IFKKFQVEVL GVVGCHPKKE GENGENVTFR VDDCEKDENF 360 MVTRAIELGE EGSLCEESYG IAFRVLDEAL KNCVNVNNSS SALTECSNSA LGLRDLEQDT 420 QGIQATRTSR KKNTNKKRKV HSETEAAMVE ARGSLQQMDN LRAGGMPLNG YYGTQQNVQG 480 LVQLNLMEPP HEGYYVNQQN MQGLGQLNTI APSHDGFFGS QQSIAGLGHL DFRQPSFTYV 540 LPLVICRNEL FTSILCHFRM SLLELLTCMA IALDMHEDDC SGVSNTVVLN LSVSQSITVE 600 ALVKGRLAFQ STIHTIAVAP RNNSPCL

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MVDQGDVVQS SLQVIGDMVD AADKAGHNRD GGVTRSPKRS TTGVEGNADF EPHDGIEFES  60
HEAAYTFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD TGTSRRPSVK  120
KTDCKASMHV KRKRDGKWYV HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKMYVEM SRQCGGNQES VTDEQFDLRW WKMVSRFELQ ENEWMHTLYE DRKKWVPASM  240
RGSFLAGMST AQRSESVNSF FDKYIHKKIS LKEFLRQYGM ILQSRYEEEA VADFDTLHKQ  300
PALKSPSPWE KQMSTIYTHA IFKKFQVEVL GVVGCHPKKE GENGENVTFR VDDCEKDENF  360
MVTRAIELGE EGSLCEESYG IAFRVLDEAL KNCVNVNNSS SALTECSNSA LGLRDLEQDT  420
QGIQATRTSR KKNTNKKRKV HSETEAAMVE ARGSLQQMDN LRAGGMPLNG YYGTQQNVQG  480
LVQLNLMEPP HEGYYVNQQN MQGLGQLNTI APSHDGFFGS QQSIAGLGHL DFRQPSFTYV  540
LPLVICRNEL FTSILCHFRM SLLELLTCMA IALDMHEDDC SGVSNTVVLN LSVSQSITVE  600
ALVKGRLAFQ STIHTIAVAP RNNSPCL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022136410.1	1e-132	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_022136411.1	1e-132	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	2e-92	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A118JXU5	0.0	A0A118JXU5_CYNCS; FAR1 DNA binding domain-containing protein
TrEMBL	A0A2P5WND5	0.0	A0A2P5WND5_GOSBA; Uncharacterized protein
STRING	XP_008451890.1	1e-129	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-81	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]