PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00189g00141.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 239aa    MW: 26451.2 Da    PI: 5.3276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00189g00141.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-173887255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               ykGVr++  +g+WvAeIr+p   + r +r +lg+f   ++Aa a++aa++kl+g
  Peaxi162Scf00189g00141.1 38 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFENSYDAAVAYDAAARKLYG 87
                              69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.66E-183797No hitNo description
PROSITE profilePS5103221.5493895IPR001471AP2/ERF domain
PfamPF008471.1E-103887IPR001471AP2/ERF domain
SMARTSM003802.6E-3338101IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-203896IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-293896IPR001471AP2/ERF domain
PRINTSPR003673.2E-83950IPR001471AP2/ERF domain
PRINTSPR003673.2E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSSTYTSVDQ RKTKKITQAT SRKGCMRGKG GPENASCTYK GVRQRTWGKW VAEIREPNRG  60
ARLWLGTFEN SYDAAVAYDA AARKLYGPDA KLNLPHLYNK QAQTQAHSPT QNCMAMNNAA  120
SGSQVTAPVY NVASPSTWSM GNDPHLYFNN FSIGDQVSYQ FLDMNQAAEG YDENNNNNKG  180
EGLGGEMWRD LNMNLPEIDD SSIWEEAKAT TSFQEAVISD PGIYACNLDD GINYPPWCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-173995360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257929.11e-124PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1J6IL771e-122A0A1J6IL77_NICAT; Dehydration-responsive element-binding protein 2d
STRINGXP_009767687.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-45ERF family protein