PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00182g00066.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 468aa    MW: 51488.5 Da    PI: 9.7746
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00182g00066.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013118140123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k +  +s+ k H +t+
  Peaxi162Scf00182g00066.1 118 WKCEKCSKKYAVQSDWKAHAKTC 140
                               58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-5106139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSSGDVFSIP SSLKGVVLPH PSQELEPNPN PKANNPSSKK RRNLPGTPGF QRDQNLQLHR  60
RGHNLPWKLK QRNKQEPVKK KVYICPEKTC VHHDSSRALG DLTGIKKHFS RKHGEKKWKC  120
EKCSKKYAVQ SDWKAHAKTC GTREYKCDCG TLFSRKDSFI THRAFCDALA EESARITSVG  180
TNNLNFNQQP NLPNGMSQIG TCFAQDFGGM TTGNSLHHQQ KPRLSLWLNQ ANNNSQLNPL  240
HMSNSNLFAS SSCSTGLPDH MVQMPSHNVF NNQMSWTLDK NVAATTTTTT QTPSNLSLSS  300
PQATSMTETL SSMYSDNQNH QTKSSTPMSA TALLQKAAQM GSTKSSPTFF NNTFGVMNSS  360
SSSSNTPMFN TLNQNNSGMH QVFAKQSEDN YNTTVSLPMP DDNNGLMGCP NMSSSSNTQG  420
VTFNLDNSLT RDFLGMGNEG GRPFLPQELA KFASMTSAMG LSHYSSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-40114183372Zinc finger protein JACKDAW
5b3h_F3e-40114183372Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7183041e-115AJ718304.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT41-2-420, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781290.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_016463819.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A1S3ZHG70.0A0A1S3ZHG7_TOBAC; zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A1U7X4880.0A0A1U7X488_NICSY; zinc finger protein JACKDAW-like isoform X1
STRINGXP_009781290.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.16e-77C2H2-like zinc finger protein