PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00175g00528.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family YABBY
Protein Properties Length: 157aa    MW: 17404.6 Da    PI: 8.8552
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00175g00528.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY101.61.6e-315614176163
                     YABBY  76 kveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                                +++++l+   ++ +  ++  ss++ s++++  +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknW
  Peaxi162Scf00175g00528.1  56 LDHHTSLQGFSSEFKIGQS--SSSTSSTSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNW 138
                               4444444444443333333..333346778888999999********************************************** PP

                     YABBY 161 ahf 163
                               a +
  Peaxi162Scf00175g00528.1 139 ARY 141
                               *75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.9E-3156141IPR006780YABBY protein
SuperFamilySSF470956.55E-985139IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.4E-595140IPR009071High mobility group box domain
CDDcd013903.21E-6102138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MNSSHPAGSC SMDLVQSSEH FCYVLHLVLL YVSVSVNLFF LQFNNNARPP LQGQCLDHHT  60
SLQGFSSEFK IGQSSSSTSS TSSEPLSPKA PFVVKPPEKK HRLPSAYNRF MKEEIQRIKA  120
ANPEIPHREA FSAAAKNWAR YIPNAPNVSL SESSNNV
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7398830.0KJ739883.1 Petunia axillaris subsp. axillaris CRC2 (CRC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263611.13e-62PREDICTED: protein CRABS CLAW isoform X2
SwissprotQ76EJ06e-35YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A075M8X63e-74A0A075M8X6_PETAX; CRC2
STRINGVIT_01s0011g00140.t014e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.19e-33YABBY family protein