PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00175g00525.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 531aa    MW: 59872.7 Da    PI: 7.4484
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00175g00525.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.34.3e-23244298155
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsef 55 
                               +Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsr+   + f
  Peaxi162Scf00175g00525.1 244 VCQVHGCNKDLSSSKDYHKRHKVCDEHSKTAIVVVNGIEQRFCQQCSRYSLANVF 298
                               6***********************************************9766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-23239298IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.221242315IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-23243312IPR004333Transcription factor, SBP-box
PfamPF031108.3E-18245296IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MQFYRFFDFG IFRYSAGFIE AQIVSSPCTC YWMEPLSYAL EERGFMFSDN VELPVDTIAR  60
SRNSVKEWNL NPFCDVDKSI CGPSQEINES TEFLDSGIAD ILKKSGARNS RSMFSFEPIH  120
GEMELGAMFN HSGTKSNNSM SSRIDLKLEE LTDYGDVRTS QSSKESSVLS SPERPLPTGK  180
AHTKSFHSRF PTSQGHDQRE DESTVHREVK SNQSLKRNSA LSSVNSSVQG KKLRTTNLHS  240
EVPVCQVHGC NKDLSSSKDY HKRHKVCDEH SKTAIVVVNG IEQRFCQQCS RYSLANVFSF  300
CSRFLDMTSQ RRVPFLFPEI LPGSFFYQEN NDSKHLKSEH KPFCISEMAM SVTSGQSPVK  360
NIQHQYGTRK HDRSKVHFGS TLSVQEFSAG QNSSCALSLL SAHSQNRLHN STDISPTPPW  420
MVKGNNYTYS KGDHHNKSPK SMTPIELYSS EVVEQDGVLQ VPDSEAVSFE IQRNGHDQRS  480
NSMNSKNFLS PGCAPTMDLV QLSSHLQRVE QQKNSVQVKQ ENDIFCSFNS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-15245298659squamosa promoter-binding protein-like 12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732941e-159LC073294.1 Nicotiana tabacum NtabSPL6-6 mRNA for squamosa promoter binding protein NtabSPL6-6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074864.10.0squamosa promoter-binding-like protein 6
TrEMBLA0A2K9ZXJ20.0A0A2K9ZXJ2_PETHY; Squamosa promoter binding-like protein 6a
STRINGSolyc05g012040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-27SBP family protein