PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00171g00618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 709aa MW: 78386 Da PI: 6.409 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.6e-20 | 24 | 79 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p++++r +L++ lgL rq+k+WFqNrR+++k Peaxi162Scf00171g00618.1 24 KKRYHRHTANQIQRLEAIFKECPHPDEKTRMQLSRDLGLAPRQIKFWFQNRRTQMK 79 678899***********************************************998 PP | |||||||
2 | START | 181.4 | 5.1e-57 | 222 | 447 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetl 76 +a a++el+++++ +ep+W+ks + +n d + ++f+++++ ++ea+r+sgvv+m++ lve+++d +W+e + Peaxi162Scf00171g00618.1 222 IAGNAMEELIRLVQTNEPLWMKSGvdgrDVLNLDSYDRIFPRTNShlknpnVRIEASRDSGVVIMNALALVEIFMDAT-KWQEFF 305 67899******************99999**************999******9**************************.****** PP S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150 + ka tlevis g ++lqlm+ elq+lsplvp R + +R ++q ++g+w+ivdvS d +q++ ss + ++++lpS Peaxi162Scf00171g00618.1 306 PtivsKARTLEVISAGvmgsrtSTLQLMYEELQVLSPLVPtRQLYLLRLCQQIEQGSWAIVDVSYDITQENLYSSTSCKVHRLPS 390 **********************************************************************977************ PP EEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 g+li++++ng+skvtwvehv+++++ h l+r l++sgla+ga +wv tlqr ce+ Peaxi162Scf00171g00618.1 391 GCLIQDMPNGYSKVTWVEHVEVEEKGLiHRLYRDLIHSGLAFGAERWVGTLQRVCER 447 **********************987555***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-22 | 6 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-19 | 9 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.54 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-19 | 22 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.79E-18 | 23 | 82 | No hit | No description |
Pfam | PF00046 | 2.2E-17 | 24 | 79 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.666 | 212 | 450 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.16E-35 | 213 | 449 | No hit | No description |
CDD | cd08875 | 6.76E-117 | 216 | 446 | No hit | No description |
SMART | SM00234 | 2.6E-50 | 221 | 447 | IPR002913 | START domain |
Pfam | PF01852 | 9.5E-49 | 222 | 447 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-5 | 275 | 433 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.1E-23 | 468 | 699 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MEYGSGGGGS TSGGDPHDAA ERRKKRYHRH TANQIQRLEA IFKECPHPDE KTRMQLSRDL 60 GLAPRQIKFW FQNRRTQMKA QHERADNCAL RSENDKIRCE NIAIREALKN VICPSCGGPP 120 VTEDSYFDEQ KLRIENMQLK EELDKISSVA AKYIGRPISQ LPPVQPIHLS SLDLSMSSFI 180 GHGPNSLDLD LDLLPGSSST IPNLAFATLN LSDMDKSLMA DIAGNAMEEL IRLVQTNEPL 240 WMKSGVDGRD VLNLDSYDRI FPRTNSHLKN PNVRIEASRD SGVVIMNALA LVEIFMDATK 300 WQEFFPTIVS KARTLEVISA GVMGSRTSTL QLMYEELQVL SPLVPTRQLY LLRLCQQIEQ 360 GSWAIVDVSY DITQENLYSS TSCKVHRLPS GCLIQDMPNG YSKVTWVEHV EVEEKGLIHR 420 LYRDLIHSGL AFGAERWVGT LQRVCERYAC VMVNGNPTQD LGGVIPSPEG KRSMMKLAQR 480 MVSNFCASIN PSNGHQWNTI SGLNEFEVRA TLQKCTDPGQ PNGVVISAAT TIWLPIPPQQ 540 VFNFFRDERT RPQWDVLSNQ NPVQEVAHIA NGSHSGNCIS VLRAYNTSQN NMLILQESCI 600 DSSGSIVVYS PVDVPAINIA MSGEDPTYIP LLPSGFTISP DGRQLDQEAS CSSSNTGGRS 660 GGSLITVVFQ ILVSSLPSAK MSPESVNTVN NLIGSTVHQI KAALNCSTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-146 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019225984.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A314KSY2 | 0.0 | A0A314KSY2_NICAT; Homeobox-leucine zipper protein hdg11 | ||||
STRING | Solyc03g098200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |