PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00170g01335.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33586.9 Da PI: 5.1916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.4e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+++++ +G g+W +++++ g++R++k+c++rw +yl Peaxi162Scf00170g01335.1 15 KGPWTAEEDEKLKEYIQGHGHGNWQLVPKRAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E++ +++++ lG++ W++Ia++++ gRt++++k+ w+++l Peaxi162Scf00170g01335.1 68 RGGFSDDEEQMIINLHSVLGNK-WSRIAAHLP-GRTDNEIKNLWNTHL 113 7889******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.911 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-12 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.693 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGRYPCCKLD NDLKKGPWTA EEDEKLKEYI QGHGHGNWQL VPKRAGLNRC GKSCRLRWTN 60 YLRPDIIRGG FSDDEEQMII NLHSVLGNKW SRIAAHLPGR TDNEIKNLWN THLKKKLLKA 120 GIDPVTHQPI NDPRLLLSLS NLMNPLESVL RLQAEVTEMA KIHLIQNIIQ VLTPPLIPNL 180 QENNFPMQQL YNLALYENIV TNVTHIDEPS PISNSSDMLL SPSVVENNIT GFSNVSNVNS 240 EHSLPSLVEA TPENSPSEQN DIIPNYFGSF SETKDFDAWE KSLDDEASNS FWQDIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 12 | 117 | 4 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803902.1 | 1e-142 | PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB39-like | ||||
TrEMBL | A0A1U7YIH1 | 1e-140 | A0A1U7YIH1_NICSY; LOW QUALITY PROTEIN: transcription factor MYB39-like | ||||
STRING | XP_009803902.1 | 1e-141 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-80 | myb domain protein 9 |