PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00170g01335.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 296aa    MW: 33586.9 Da    PI: 5.1916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00170g01335.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.4e-191562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l+++++ +G g+W +++++ g++R++k+c++rw +yl
  Peaxi162Scf00170g01335.1 15 KGPWTAEEDEKLKEYIQGHGHGNWQLVPKRAGLNRCGKSCRLRWTNYL 62
                              79********************************************97 PP

2Myb_DNA-binding45.91.3e-1468113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg ++ +E++ +++++  lG++ W++Ia++++ gRt++++k+ w+++l
  Peaxi162Scf00170g01335.1  68 RGGFSDDEEQMIINLHSVLGNK-WSRIAAHLP-GRTDNEIKNLWNTHL 113
                               7889******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-24765IPR009057Homeodomain-like
PROSITE profilePS5129426.9111066IPR017930Myb domain
SuperFamilySSF466894.97E-3112109IPR009057Homeodomain-like
SMARTSM007172.3E-161464IPR001005SANT/Myb domain
PfamPF002491.8E-171562IPR001005SANT/Myb domain
CDDcd001671.49E-121762No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2566117IPR009057Homeodomain-like
PROSITE profilePS5129418.69367117IPR017930Myb domain
SMARTSM007172.8E-1267115IPR001005SANT/Myb domain
PfamPF002493.2E-1368113IPR001005SANT/Myb domain
CDDcd001674.41E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRYPCCKLD NDLKKGPWTA EEDEKLKEYI QGHGHGNWQL VPKRAGLNRC GKSCRLRWTN  60
YLRPDIIRGG FSDDEEQMII NLHSVLGNKW SRIAAHLPGR TDNEIKNLWN THLKKKLLKA  120
GIDPVTHQPI NDPRLLLSLS NLMNPLESVL RLQAEVTEMA KIHLIQNIIQ VLTPPLIPNL  180
QENNFPMQQL YNLALYENIV TNVTHIDEPS PISNSSDMLL SPSVVENNIT GFSNVSNVNS  240
EHSLPSLVEA TPENSPSEQN DIIPNYFGSF SETKDFDAWE KSLDDEASNS FWQDIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29121174108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803902.11e-142PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB39-like
TrEMBLA0A1U7YIH11e-140A0A1U7YIH1_NICSY; LOW QUALITY PROTEIN: transcription factor MYB39-like
STRINGXP_009803902.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-80myb domain protein 9