PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00166g00045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TCP | ||||||||
Protein Properties | Length: 328aa MW: 36228.3 Da PI: 7.9607 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.6 | 3.4e-32 | 51 | 206 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.....ea 75 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ ++ +++ Peaxi162Scf00166g00045.1 51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLQIPPHqgnfsnP-NlypmlGV 134 689*************************************************************777765544330.03333422 PP TCP 76 esssssasnsssg.......................................kaaksaakskksqksaasal 108 +ss s++++s+++ + ++s++++ +s ++++ ++ Peaxi162Scf00166g00045.1 135 GSSTSQVNTSNKEglksnwdvtlepsnkeglnaipynsnflkwdpsnlslahSVSSSTHHGANSVHQQEDVH 206 333333332222244455666666666666667777666777766666666433333334444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.779 | 53 | 111 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-28 | 53 | 125 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MITREVKGKN PSDHHDVNTK TPKTDPSSST NATTSWTRLK DPRIVRVSRA FGGKDRHSKV 60 CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKDEIDE LPPLQIPPHQ 120 GNFSNPNLYP MLGVGSSTSQ VNTSNKEGLK SNWDVTLEPS NKEGLNAIPY NSNFLKWDPS 180 NLSLAHSVSS STHHGANSVH QQEDVHNFNV LTFPTTMSMP MLGNSQVFVY PQGLPQSFFH 240 SHNINVGASS SEFDPKEINF QMLSSSTSEN PLSSSNSFRH SIESSTSHSH DSAIYIFFGI 300 SSLITNFTVQ LVAAAAAAEE KEKRKSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 3e-83 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792504.1 | 1e-126 | PREDICTED: transcription factor TCP13-like | ||||
TrEMBL | A0A1U7XZU9 | 1e-124 | A0A1U7XZU9_NICSY; transcription factor TCP13-like | ||||
STRING | XP_009792504.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-47 | plastid transcription factor 1 |