PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00165g01722.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Dof

Protein Properties

Length: 384aa MW: 41157.5 Da PI: 9.8563

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00165g01722.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.9	4.6e-38	77	137	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+alkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+sss Peaxi162Scf00165g01722.1 77 ETALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSSS 137 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-34	60	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MVFSSIPAYL DPANWQQQAG GSITNHQLIT STPSQSAAPP ALPLPPPLQP HGVGGAGSIR 60 PGSMADRARL ANIPMPETAL KCPRCESSNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL 120 RSVPVGGGCR RNKRSSSKSN NSSNNNSSKS PASSTSTDGR QATTNSGSTS TISSHSNSFS 180 GPTSTSTASL LGLMTPQFPP LRFMSPLGQL SHDQFTPSNN MNLNFSTSGT GESLFMSNSN 240 LLGGGSGVAS LLSTTNVEHW RILQQQQQQQ QQQMTHQFPN FLGGFDPTNP PNLSIFPFQG 300 GVEGVQFLGE STTSHQMRPK ISTSMLNQMA SVKMEDHNNN NNQDQSALSR QLLGIPGNEN 360 WNTNASAWSD LSASFSSSST SNAL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MVFSSIPAYL DPANWQQQAG GSITNHQLIT STPSQSAAPP ALPLPPPLQP HGVGGAGSIR  60
PGSMADRARL ANIPMPETAL KCPRCESSNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL  120
RSVPVGGGCR RNKRSSSKSN NSSNNNSSKS PASSTSTDGR QATTNSGSTS TISSHSNSFS  180
GPTSTSTASL LGLMTPQFPP LRFMSPLGQL SHDQFTPSNN MNLNFSTSGT GESLFMSNSN  240
LLGGGSGVAS LLSTTNVEHW RILQQQQQQQ QQQMTHQFPN FLGGFDPTNP PNLSIFPFQG  300
GVEGVQFLGE STTSHQMRPK ISTSMLNQMA SVKMEDHNNN NNQDQSALSR QLLGIPGNEN  360
WNTNASAWSD LSASFSSSST SNAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	7e-63	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758525.1	1e-155	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_016465077.1	1e-155	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S3ZL43	1e-154	A0A1S3ZL43_TOBAC; dof zinc finger protein DOF2.4-like
TrEMBL	A0A1U7V9L6	1e-154	A0A1U7V9L6_NICSY; dof zinc finger protein DOF2.4-like
STRING	XP_009758525.1	1e-155	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-46	DNA binding with one finger 2.4