PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00165g00128.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 562aa    MW: 62358.4 Da    PI: 8.1643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00165g00128.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.23e-1161112348
                               SS-HHH.......HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteE.......dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT+eE       d+ l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Peaxi162Scf00165g00128.1  61 GWTPEEikspfpqDDTLRRAVAAYRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 112
                               5666665555555889*********************.************986 PP
2Myb_DNA-binding58.12e-18118164148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W  eEde+++++v+++G+  W+ Iar ++ gR +kqc++rw+++l
  Peaxi162Scf00165g00128.1 118 KGPWNREEDEKIIELVAKYGPTKWSVIARSLP-GRIGKQCRERWHNHL 164
                               79******************************.*************97 PP
3Myb_DNA-binding55.31.5e-17170213146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +++WT eE+  l da++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Peaxi162Scf00165g00128.1 170 KDAWTLEEERALMDAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 213
                               679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.37254112IPR017930Myb domain
SuperFamilySSF466898.61E-1158122IPR009057Homeodomain-like
SMARTSM007171.9E-958114IPR001005SANT/Myb domain
PfamPF002494.4E-1059112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1761125IPR009057Homeodomain-like
CDDcd001671.36E-1062112No hitNo description
PROSITE profilePS5129431.061113168IPR017930Myb domain
SuperFamilySSF466896.24E-31115211IPR009057Homeodomain-like
SMARTSM007171.6E-17117166IPR001005SANT/Myb domain
PfamPF002493.8E-17118164IPR001005SANT/Myb domain
CDDcd001672.99E-15120164No hitNo description
Gene3DG3DSA:1.10.10.601.0E-26126172IPR009057Homeodomain-like
PROSITE profilePS5129423.271169219IPR017930Myb domain
SMARTSM007171.3E-16169217IPR001005SANT/Myb domain
PfamPF002492.0E-15170213IPR001005SANT/Myb domain
CDDcd001671.69E-12172215No hitNo description
Gene3DG3DSA:1.10.10.602.3E-22173219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDELKVEDCC TENKQSAVAS SSSVSENSGS VTLRSPAVSS PTPTSPTHRR TTGPIRRAKG  60
GWTPEEIKSP FPQDDTLRRA VAAYRGKCWK KIAEFFPDRS EVQCLHRWQK VLNPELVKGP  120
WNREEDEKII ELVAKYGPTK WSVIARSLPG RIGKQCRERW HNHLDPTIKK DAWTLEEERA  180
LMDAHRIHGN KWAEIAKVLP GRTDNAIKNH WNSSLRKKLD FYLATGNLPP ATGEGLQNGC  240
RNTDGTAKAE EFLLGSNKRS EAAVSSGITD TCKIENGGKN HYNARLQVAE ISASTGGPQT  300
ESTDSEVARW DAQSPEIDAI QHIKPSTESE KRYDGRRINS AVDQLNVIEA PFPCEIPTYG  360
TLYYEPPSLE SRSPLDSNLL NICWDQCESD ASPSPSSNSF FTPPSTKGSS LYAQTPESVL  420
KYAARSFPNT PSILRKRKTQ GNFSTLINKM GKTGGDICKD KPTDACEVNR IDSSEKSGMH  480
NEGLPRNFSN GIGLFNSQPF NASPPYRLRS KRTSIFKSVE KQLEFAFNNE KKHDTSNGFS  540
DSTDNEISHA VEKATHSPES AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-65582195159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-65582195159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800958.10.0PREDICTED: myb-related protein B-like isoform X1
RefseqXP_016475731.10.0PREDICTED: myb-related protein B-like isoform X1
TrEMBLA0A1S4AGF60.0A0A1S4AGF6_TOBAC; myb-related protein B-like isoform X1
TrEMBLA0A1U7YCU70.0A0A1U7YCU7_NICSY; myb-related protein B-like isoform X1
STRINGXP_009800958.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-129myb domain protein 3r-5