PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00164g01137.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 745aa    MW: 84770.4 Da    PI: 6.584
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00164g01137.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS27.83.1e-09137797164
                      GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetger 164
                               +  +aI +++++++rvH +D+++  Gl  p +++aLa+R++     l+i +vg     sk+++eet +r
  Peaxi162Scf00164g01137.1  13 IHRKAIFDSIKSAKRVHLVDLGLHSGLPMPIMMHALANRNQClLELLKIAVVGI----SKQNIEETCKR 77 
                               5668************************************6625699******9....55555555444 PP
2GRAS78.41.3e-2474201182313
                      GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                               ++kr+edl+ e+++ ++gE++aV +  +l ++l    + +++ d +L+l+ksl+P v+vv+e e ++n++ F  rf   l+++ a
  Peaxi162Scf00164g01137.1  74 TCKRTEDLQKENFESQEGEVVAVYSESRLCTML----AWPDHLDGLLRLIKSLKPFVMVVSETEGSTNTPIFIYRFNALLSFCGA 154
                               57899***************************9....56666677**************************************** PP

                      GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                               + d+l +++ +++++r+  E  ++ + i+nv+  eg+er++rh + +
  Peaxi162Scf00164g01137.1 155 IIDCLGTGMKPDDQNRAIAEGNYFPETIQNVIISEGEERFNRHSKIS 201
                               *******************************************9876 PP
3GRAS297.14.4e-913717431374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.sseelaalk 82 
                               lve Ll+ Ae v++g++ +a+++L +  + +s +g+p++R++ yf +AL+ r++  ++  + k + + + ++ +n   +    + 
  Peaxi162Scf00164g01137.1 371 LVENLLASAEKVENGQFDRARKILDNCDKFCSVTGNPIERIVYYFSQALHDRINWeTGRDTTKGIgKKRLEHIENtLMSLSPCMI 455
                               5789*************************************************98677888888844444443332333333334 PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerL 165
                               + ++  P+ ++s++ta qaI + v+++e+vHiiD++i+ G+QW  L+qaLa+ +  ++  +l+iT++     + ++++e+t erL
  Peaxi162Scf00164g01137.1 456 AAHQSVPLSQVSQFTAVQAIIDHVAESEKVHIIDLEIGSGMQWTILMQALATHQceSSIKHLKITALCT---KLRHKIENTLERL 537
                               499************************************************999867778*******99...57999******** PP

                      GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                +fA++l++pf+fn++++ ++ +l+ e+++++++Ea+aV + + l+r+l ++ +l+s    +++++k+++P++++++e ea+hns
  Peaxi162Scf00164g01137.1 538 MSFAKSLNLPFSFNIVMVADVMELKQEDFELDSEEATAVFSRYYLMRMLVRPDKLDS----LMRVIKGINPRIMIITEVEANHNS 618
                               *************************************************55555555....************************ PP

                      GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                               + F++rf+eal +y a+fd le  + ++++ ri  E e+l++ i+++va+eg+er+ rh +   Wr  + + G+++v+ls++ + 
  Peaxi162Scf00164g01137.1 619 PVFVDRFVEALFFYGAFFDLLEDCMKHDEKSRIATESEYLSQGIRSIVAAEGEERTIRHVKIDVWRTFFARYGMEAVELSKSSMY 703
                               ************************************************************************************* PP

                      GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               qa+l+l++++ +   ++++++++l++gWk+ p+ s+SaW+
  Peaxi162Scf00164g01137.1 704 QANLVLKNFDcGSSCTLDKNHNCLIIGWKGTPINSLSAWK 743
                               **********9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.3131242IPR005202Transcription factor GRAS
PfamPF035144.4E-2274201IPR005202Transcription factor GRAS
PROSITE profilePS5098542.701345722IPR005202Transcription factor GRAS
PfamPF035141.5E-88371743IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MSRRTPFPIH HPIHRKAIFD SIKSAKRVHL VDLGLHSGLP MPIMMHALAN RNQCLLELLK  60
IAVVGISKQN IEETCKRTED LQKENFESQE GEVVAVYSES RLCTMLAWPD HLDGLLRLIK  120
SLKPFVMVVS ETEGSTNTPI FIYRFNALLS FCGAIIDCLG TGMKPDDQNR AIAEGNYFPE  180
TIQNVIISEG EERFNRHSKI SEDSRKSSEV NLFSPGLGEH ITEKGPSCQQ DKLQLLVDFV  240
SLDDWDFDVV PLQSQPNVEE TKNILFVQPE KSYKITESKR KMGSPFNILK DYDKTLRRLK  300
TEKNMSVKTN YKTECIKAKE CKSSTVEILR LGAEKFIQSF TISDQESYML SHPFASSFVG  360
LSEEDTRSVA LVENLLASAE KVENGQFDRA RKILDNCDKF CSVTGNPIER IVYYFSQALH  420
DRINWETGRD TTKGIGKKRL EHIENTLMSL SPCMIAAHQS VPLSQVSQFT AVQAIIDHVA  480
ESEKVHIIDL EIGSGMQWTI LMQALATHQC ESSIKHLKIT ALCTKLRHKI ENTLERLMSF  540
AKSLNLPFSF NIVMVADVME LKQEDFELDS EEATAVFSRY YLMRMLVRPD KLDSLMRVIK  600
GINPRIMIIT EVEANHNSPV FVDRFVEALF FYGAFFDLLE DCMKHDEKSR IATESEYLSQ  660
GIRSIVAAEG EERTIRHVKI DVWRTFFARY GMEAVELSKS SMYQANLVLK NFDCGSSCTL  720
DKNHNCLIIG WKGTPINSLS AWKFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4240474336375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246256.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1J6IDJ40.0A0A1J6IDJ4_NICAT; Della protein rgl2
STRINGXP_009800222.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-57RGA-like 2