PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00164g01128.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 681aa    MW: 76606.9 Da    PI: 7.0113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00164g01128.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.33.6e-1183096791374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL+ cA+av++++ + a++lL+++++ +sp gd mqRla+yf+++L+ar+a+s++++yka+ +++ s    +++l+++++++
  Peaxi162Scf00164g01128.1 309 LRTLLTLCAQAVAADNRRTANELLQQIRQCSSPMGDGMQRLAHYFANGLEARMAGSGTHIYKAVITRPIS---AVDVLKSYQVLH 390
                               5789****************************************************************99...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                v P+ k s++  N++I + +e++++vHiiDf+i++G+QWp+L+q L+sR++gpp+lRiTg++ p++g   +e++eetg+rLa++
  Peaxi162Scf00164g01128.1 391 AVAPLWKNSNFFSNKTITNLAEKASTVHIIDFGIMYGFQWPSLIQRLSSRAGGPPKLRITGIDFPHPGfrPAERVEETGRRLANY 475
                               ******************************************************************9999*************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               Ae+++vpfefn+ +a+++e+++le+L+++++E+l+Vn+ ++l +llde+v ++s+rd vL+l+++l+P+v++    +  +n++ F
  Peaxi162Scf00164g01128.1 476 AESFKVPFEFNA-IAQKWETVKLEDLKIHKNEVLVVNCLFRLRSLLDETVVSNSPRDVVLNLIRKLNPDVFIQGIVNGGYNAPFF 559
                               ************.7*********************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf eal +ys+lfd+lea +pre +er+ vE+ +lg+e++nv+ace aer+er et+++W+ r+++aGF+++pl+++++  + 
  Peaxi162Scf00164g01128.1 560 VTRFREALFHYSSLFDMLEAIIPREMHERMLVEKTMLGPEAMNVIACEDAERIERPETYKQWQVRMMKAGFRQLPLDKEIMRMVT 644
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++ ++++ + ++   ++l++gWk+r  +++S W+
  Peaxi162Scf00164g01128.1 645 EHVKLYNKN-FVIDVGGDWLLQGWKGRISYALSTWK 679
                               *******66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.691283660IPR005202Transcription factor GRAS
PfamPF035141.2E-115309679IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MTIEKDFMRL SEAGSAIKLE DKEASSFFPD PNLINNLRVS DNLVNKNHSA KSDVKPNTTS  60
VPSSSADDSH YDFSDVVLKY INQMLMEEDI EDNACMCQES AALQAAERSF YEVIGEKYPL  120
LANHENLSDL GQNGQYTREH SSFYDSGNDV RDGLLCPNWN LDHGENDVSL AKDFPNGIAL  180
CSTSQSSHSS SGIVTDVHVN SPQNEERKDA VVKLTPVGSR GKKNTHHEDV DSAEGRNIKQ  240
LAVFSESTIR SEMFDRVLLC SKGKNESALR EALQTISRQN ASENGLSKGF NGKKLQGKNK  300
EGKRDVVDLR TLLTLCAQAV AADNRRTANE LLQQIRQCSS PMGDGMQRLA HYFANGLEAR  360
MAGSGTHIYK AVITRPISAV DVLKSYQVLH AVAPLWKNSN FFSNKTITNL AEKASTVHII  420
DFGIMYGFQW PSLIQRLSSR AGGPPKLRIT GIDFPHPGFR PAERVEETGR RLANYAESFK  480
VPFEFNAIAQ KWETVKLEDL KIHKNEVLVV NCLFRLRSLL DETVVSNSPR DVVLNLIRKL  540
NPDVFIQGIV NGGYNAPFFV TRFREALFHY SSLFDMLEAI IPREMHERML VEKTMLGPEA  600
MNVIACEDAE RIERPETYKQ WQVRMMKAGF RQLPLDKEIM RMVTEHVKLY NKNFVIDVGG  660
DWLLQGWKGR ISYALSTWKA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5531667826378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607974.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_009607976.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_009607977.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_018628267.10.0PREDICTED: scarecrow-like protein 14
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1S4AZ920.0A0A1S4AZ92_TOBAC; scarecrow-like protein 14
STRINGXP_009607974.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein