PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00164g00523.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SBP

Protein Properties

Length: 983aa MW: 108766 Da PI: 7.2671

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00164g00523.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	142	219	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yh+rhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Peaxi162Scf00164g00523.1 142 CCQVQDCQVDLSNAKDYHKRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 219 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-30	135	204	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.761	140	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.46E-37	141	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.3E-29	143	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.87E-6	734	843	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.0E-6	736	845	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.46E-7	737	844	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MEAHNCNGKK SMEWDLNDWK WDGDLFTATP LNSLPLDCRS KEFLPIGSKI QETSRILNLN 60 SLSSGSDEMT LLGNDKGRKE LEKRRRGAVV IDENDEVESL NLKLGEQIYP MMEGEVEKWE 120 EKSGKKKKIG GGNSSNSSRV VCCQVQDCQV DLSNAKDYHK RHKVCDVHSK AAKALVGNVM 180 QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTHPE NVANGASTND ERGTNSSDQT 240 KDQDLLSHLL RNLASGAAAT NERNTPALLP APPDVHNTGT CMGAPKEDSP RPNGDCLIIP 300 ASEVTEKRTG PSDAERGISQ NLCASQPDFL YPRKESLPIC ANASATASAS AKLIDLNNIY 360 DDSQDGNEKL LNSSSANPGA ASSSCPLWIY HDPHKSSPPS ISGNPRSTSS LSTSTSSGEA 420 QILDWLSNSP TDIESYIRPG CIVLTLYLRM DKSIWKELYC DLNSSLRKLL NASTDSFWQT 480 GWIYTRVNDR VAFLFNGIFS SVVASFTFCL VVVLDTPLPV KSHWSCGISI VKPIAVCASE 540 RVQFLVKGFN LSRPTTRLLC ALEGKYLVQG NCTDMMVGAD SCMQHEEIQS LSFPCLMPNF 600 IGRGFIEVED HGLSSNFFPF IVAEKDVCSE IRTLESIIEL AETAGAFLGG TEELQARDQA 660 LDFLHEAGWL LHRISRVGSD DNLNLFPFQR FKWLIQFSID HDWCAVVKKL LDVLCNGIID 720 VGQQSSLDVA LREVGILHQA VRRKCRSMVE VLLRYRAHGA FDKSGLQKQQ GGHGYLFRPD 780 AVGPGGLTPL HIVASLAGFE NILDALIDDP GEVGIEAWKS ARDSTGLAPN DYACLRGHYS 840 YIHMVQKKIN EKPGDEHVVL NIPGSLLDNS LKQKLSDGHR SVKVASLQTE KSQCRQCKQK 900 LSYGNSGSSL ALYKPAMLSM VAIAAICVCV ALLFKSSPEV LYSFRPFRWE QLKTGHWIVV 960 VDLAERSPNM LRIISKSLYI STI

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MEAHNCNGKK SMEWDLNDWK WDGDLFTATP LNSLPLDCRS KEFLPIGSKI QETSRILNLN  60
SLSSGSDEMT LLGNDKGRKE LEKRRRGAVV IDENDEVESL NLKLGEQIYP MMEGEVEKWE  120
EKSGKKKKIG GGNSSNSSRV VCCQVQDCQV DLSNAKDYHK RHKVCDVHSK AAKALVGNVM  180
QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTHPE NVANGASTND ERGTNSSDQT  240
KDQDLLSHLL RNLASGAAAT NERNTPALLP APPDVHNTGT CMGAPKEDSP RPNGDCLIIP  300
ASEVTEKRTG PSDAERGISQ NLCASQPDFL YPRKESLPIC ANASATASAS AKLIDLNNIY  360
DDSQDGNEKL LNSSSANPGA ASSSCPLWIY HDPHKSSPPS ISGNPRSTSS LSTSTSSGEA  420
QILDWLSNSP TDIESYIRPG CIVLTLYLRM DKSIWKELYC DLNSSLRKLL NASTDSFWQT  480
GWIYTRVNDR VAFLFNGIFS SVVASFTFCL VVVLDTPLPV KSHWSCGISI VKPIAVCASE  540
RVQFLVKGFN LSRPTTRLLC ALEGKYLVQG NCTDMMVGAD SCMQHEEIQS LSFPCLMPNF  600
IGRGFIEVED HGLSSNFFPF IVAEKDVCSE IRTLESIIEL AETAGAFLGG TEELQARDQA  660
LDFLHEAGWL LHRISRVGSD DNLNLFPFQR FKWLIQFSID HDWCAVVKKL LDVLCNGIID  720
VGQQSSLDVA LREVGILHQA VRRKCRSMVE VLLRYRAHGA FDKSGLQKQQ GGHGYLFRPD  780
AVGPGGLTPL HIVASLAGFE NILDALIDDP GEVGIEAWKS ARDSTGLAPN DYACLRGHYS  840
YIHMVQKKIN EKPGDEHVVL NIPGSLLDNS LKQKLSDGHR SVKVASLQTE KSQCRQCKQK  900
LSYGNSGSSL ALYKPAMLSM VAIAAICVCV ALLFKSSPEV LYSFRPFRWE QLKTGHWIVV  960
VDLAERSPNM LRIISKSLYI STI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	134	216	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	217	KRRRKTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-176	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	1e-176	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015076164.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A2K9ZXJ1	0.0	A0A2K9ZXJ1_PETHY; Squamosa promoter binding-like protein 12b
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1