PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00164g00216.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 253aa    MW: 29890 Da    PI: 9.1646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00164g00216.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-191764148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Peaxi162Scf00164g00216.1 17 KGPWTAEEDRLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64
                              79********************************************97 PP
2Myb_DNA-binding48.32.4e-1570114147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg  T+ E+ +++++++ +G++ W+tIar ++ gRt++++k++w+++
  Peaxi162Scf00164g00216.1  70 RGQITPYEERIILELHAIWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                               6788999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5441268IPR017930Myb domain
SuperFamilySSF466891.95E-3015111IPR009057Homeodomain-like
SMARTSM007173.7E-171666IPR001005SANT/Myb domain
PfamPF002495.2E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-241871IPR009057Homeodomain-like
CDDcd001675.41E-121964No hitNo description
PROSITE profilePS5129419.75769119IPR017930Myb domain
SMARTSM007171.3E-1369117IPR001005SANT/Myb domain
PfamPF002494.6E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2472120IPR009057Homeodomain-like
CDDcd001673.24E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAEQMGNWGV IEDEWRKGPW TAEEDRLLIE YVNLHGEGRW NSVARLAGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPYEERI ILELHAIWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKVK  120
KSIDNSEKTK ARLLKKQQFQ QHQQEQLKNQ IYMKKVMSLL EGNYENEVPI LPQRKQEMDF  180
MYQNTTEQEQ GGGFFYSMLN GYATVPVPEV SSNEDMIMWD HGLWNLEDVN ANFNTAAYNK  240
TLPCLQPLAT PFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28171197108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794813.11e-131PREDICTED: transcription factor MYB59-like
TrEMBLA0A1U7XV331e-130A0A1U7XV33_NICSY; transcription factor MYB59-like
STRINGXP_009794813.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-81myb domain protein 305