PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00164g00073.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 320aa    MW: 37376.5 Da    PI: 7.3602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00164g00073.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-143981148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT eEd  l++ ++ +G g+W++ ar+ g     k+c++rw++yl
  Peaxi162Scf00164g00073.1 39 RGPWTVEEDFTLINFIAHHGEGRWNSLARCAG-----KSCRLRWLNYL 81
                              89******************************.....*********97 PP
2Myb_DNA-binding51.32.7e-1687130146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Peaxi162Scf00164g00073.1  87 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130
                               7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3743481IPR017930Myb domain
SuperFamilySSF466894.87E-2736128IPR009057Homeodomain-like
SMARTSM007173.4E-113883IPR001005SANT/Myb domain
PfamPF002492.3E-113981IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-174088IPR009057Homeodomain-like
CDDcd001671.71E-84181No hitNo description
PROSITE profilePS5129423.24682136IPR017930Myb domain
SMARTSM007171.3E-1486134IPR001005SANT/Myb domain
PfamPF002495.4E-1587130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2389135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDHHHKTKVG LGRRGEDYRT SNVMNQENIR EEDIMDLRRG PWTVEEDFTL INFIAHHGEG  60
RWNSLARCAG KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT  120
DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMKYLWMPRL VERIQAAATT AATSTTTTNT  180
YIQNLENQQS VPNMSHMSQF LPIQLENHKK TNSINHSSMT LTLENSSTTT SSDNSIGRQV  240
SPTSDLTDCY YNFSINQSSN NQDYTPFNQN YGESLISATG YFPQAVDQQN SQWMDSEYVS  300
DNSWNIEDMW FLQQQLNNNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24341342106B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621085.11e-139PREDICTED: transcription factor MYB108-like
RefseqXP_016479574.11e-139PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY32e-89MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A1S4ASB21e-138A0A1S4ASB2_TOBAC; transcription factor MYB108-like
STRINGXP_009621085.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.17e-84myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]