PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00160g00722.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 386aa MW: 43661.6 Da PI: 7.2483

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00160g00722.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+ +W + ++++g++R++k+c++rw++yl Peaxi162Scf00160g00722.1 14 KGPWSPEEDAKLKAYIEQHGTCgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.275	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	5.26E-19	11	98	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-13	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-25	15	69	IPR009057	Homeodomain-like
CDD	cd00167	1.09E-9	16	62	No hit	No description
PROSITE profile	PS50090	4.67	63	99	IPR017877	Myb-like domain
SMART	SM00717	1.4	67	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-10	70	106	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MGRAPCCDKN SVKKGPWSPE EDAKLKAYIE QHGTCGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIL SLYISIGSRT DNDIKNYWNT KLKKKLFGKQ RKNLKGNNQK 120 QGSRKGREMS SSMSMVSNEN IIANPSWPEL PILQPIPYSN EEPRFNDHSS IRKLLMKLGG 180 KFSDDDNDDE KPMNEPPSNP QYPMDNSLIQ PIYDQDCINM MHSPFTNNTH YNMDAKALCW 240 ADTDTERRKL GERMGSDTPV VPTVNDGCNF INELEHMMYT NPQKLSGLEM LYVDMLNNKH 300 ATTLGGSLDL EDMNNLVFPL PPLDASNTEG HQHGTLLQGG ALNELRLQAM SHPPCVWLQQ 360 PGKGWLSEAI MIRESRVEGL SLNGSK

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MGRAPCCDKN SVKKGPWSPE EDAKLKAYIE QHGTCGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIL SLYISIGSRT DNDIKNYWNT KLKKKLFGKQ RKNLKGNNQK  120
QGSRKGREMS SSMSMVSNEN IIANPSWPEL PILQPIPYSN EEPRFNDHSS IRKLLMKLGG  180
KFSDDDNDDE KPMNEPPSNP QYPMDNSLIQ PIYDQDCINM MHSPFTNNTH YNMDAKALCW  240
ADTDTERRKL GERMGSDTPV VPTVNDGCNF INELEHMMYT NPQKLSGLEM LYVDMLNNKH  300
ATTLGGSLDL EDMNNLVFPL PPLDASNTEG HQHGTLLQGG ALNELRLQAM SHPPCVWLQQ  360
PGKGWLSEAI MIRESRVEGL SLNGSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-16	14	106	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF244557	2e-35	AF244557.1 Magnolia x soulangeana 16S ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product.
GenBank	DQ629459	2e-35	DQ629459.1 Tasmannia insipida small subunit ribosomal RNA gene, partial sequence; chloroplast.
GenBank	DQ629588	2e-35	DQ629588.1 Myristica yunnanensis small subunit ribosomal RNA gene, partial sequence; chloroplast.
GenBank	DQ887676	2e-35	DQ887676.1 Drimys granadensis chloroplast, complete genome.
GenBank	DQ899947	2e-35	DQ899947.1 Liriodendron tulipifera chloroplast, complete genome.
GenBank	EF380352	2e-35	EF380352.1 Chloranthus spicatus chloroplast, complete genome.
GenBank	EF380354	2e-35	EF380354.1 Illicium oligandrum chloroplast, complete genome.
GenBank	EU161533	2e-35	EU161533.1 Illicium verum small subunit ribosomal RNA gene, partial sequence; chloroplast.
GenBank	HM775382	2e-35	HM775382.1 Magnolia kwangsiensis chloroplast, complete genome.
GenBank	HQ664627	2e-35	HQ664627.1 Tasmannia lanceolata ribosomal protein L2 (rpl2) gene, exons 1, 2 and partial cds; ribosomal protein L23 (rpl23) gene, complete cds; tRNA-Ile (trnI-CAU) gene, complete sequence; hypothetical chloroplast RF2 (ycf2) gene, complete cds; tRNA-Leu (trnL-CAA) gene, complete sequence; NADH-plastoquinone oxidoreductase subunit 2 (ndhB) and ribosomal protein S7 (rps7) genes, complete cds; ribosomal protein S12 (rps12) gene, exons 2, 3 and partial cds; tRNA-Val (trnV-GAC), 16S ribosomal RNA (rrn16), tRNA-Ile (trnI-GAU), tRNA-Ala (trnA-UGC), 23S ribosomal RNA (rrn23), 4.5S ribosomal RNA (rrn4.5), 5S ribosomal RNA (rrn5), tRNA-Arg (trnR-ACG), and tRNA-Asn (trnN-GUU) genes, complete sequence; and hypothetical chloroplast RF1 (ycf1) gene, partial cds; plastid.
GenBank	HQ664633	2e-35	HQ664633.1 Sarcandra chloranthoides ribosomal protein L2 (rpl2) gene, exons 1, 2 and partial cds; ribosomal protein L23 (rpl23) gene, complete cds; tRNA-Ile (trnI-CAU) gene, complete sequence; hypothetical chloroplast RF2 (ycf2) gene, complete cds; tRNA-Leu (trnL-CAA) gene, complete sequence; NADH-plastoquinone oxidoreductase subunit 2 (ndhB) and ribosomal protein S7 (rps7) genes, complete cds; ribosomal protein S12 (rps12) gene, exons 2, 3 and partial cds; and tRNA-Val (trnV-GAC), 16S ribosomal RNA (rrn16), tRNA-Ile (trnI-GAU), tRNA-Ala (trnA-UGC), 23S ribosomal RNA (rrn23), 4.5S ribosomal RNA (rrn4.5), 5S ribosomal RNA (rrn5), tRNA-Arg (trnR-ACG), and tRNA-Asn (trnN-GUU) genes, complete sequence; plastid.
GenBank	JN227740	2e-35	JN227740.1 Magnolia denudata isolate BJ006 chloroplast, complete genome.
GenBank	JN867576	2e-35	JN867576.1 UNVERIFIED: Magnolia liliiflora chloroplast, complete genome.
GenBank	JN867577	2e-35	JN867577.1 Magnolia denudata voucher BJ007 chloroplast, complete genome.
GenBank	JN867579	2e-35	JN867579.1 Magnolia officinalis chloroplast, complete genome.
GenBank	JN867580	2e-35	JN867580.1 Magnolia officinalis subsp. biloba voucher SC001 chloroplast, complete genome.
GenBank	JN867581	2e-35	JN867581.1 Magnolia officinalis subsp. biloba voucher SC002 chloroplast, complete genome.
GenBank	JN867582	2e-35	JN867582.1 Magnolia officinalis subsp. biloba voucher SNJ044 chloroplast, complete genome.
GenBank	JN867584	2e-35	JN867584.1 Magnolia grandiflora voucher NJ016 chloroplast, complete genome.
GenBank	JN867587	2e-35	JN867587.1 Magnolia grandiflora voucher NJ018 chloroplast, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785472.1	0.0	PREDICTED: transcription factor RAX1-like
Swissprot	Q9M2Y9	1e-64	RAX3_ARATH; Transcription factor RAX3
TrEMBL	A0A1U7WZZ4	0.0	A0A1U7WZZ4_NICSY; transcription factor RAX1-like
STRING	XP_009785472.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-59	myb domain protein 36

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]