PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00160g00148.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ERF

Protein Properties

Length: 364aa MW: 40214.9 Da PI: 5.9226

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00160g00148.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.3	5.1e-20	186	235	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ kl+g Peaxi162Scf00160g00148.1 186 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDKAAYKLRG 235 59****9.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.49E-33	185	245	No hit	No description
PROSITE profile	PS51032	23.077	186	243	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-37	186	249	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.0E-32	186	244	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.43E-23	186	244	IPR016177	DNA-binding domain
Pfam	PF00847	1.3E-13	187	235	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-11	187	198	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-11	209	225	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MATSTMDFWT STLLELDSSS NSMKSGGELM DALEPFIKSA SPNNYPPISP SNSYPSSNIQ 60 SFPIMSSLSP STSYPYDSFL STPQPNMSYN DCSTSTTSPN PNFLYGVSGF EVEQPSSNIG 120 LNMLTQVQID QIQTQIYLQN NQQQQMMAAA TFQDPWIHKH TQHASFLGPK PVSMKQSGSP 180 PKPPKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFETAE EAALAYDKAA YKLRGDFARL 240 NFPHLRHNGS LIGGEFGEYK PLQSSVDAKL QAICQDLAQG KSIDAKKKRK VSKKIEEVES 300 KTIEAGSESD GSGSGLASGS GGSSPISDLT FAEFAEEDTT TWDMCSENFM LQKFPSHEID 360 WASL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MATSTMDFWT STLLELDSSS NSMKSGGELM DALEPFIKSA SPNNYPPISP SNSYPSSNIQ  60
SFPIMSSLSP STSYPYDSFL STPQPNMSYN DCSTSTTSPN PNFLYGVSGF EVEQPSSNIG  120
LNMLTQVQID QIQTQIYLQN NQQQQMMAAA TFQDPWIHKH TQHASFLGPK PVSMKQSGSP  180
PKPPKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFETAE EAALAYDKAA YKLRGDFARL  240
NFPHLRHNGS LIGGEFGEYK PLQSSVDAKL QAICQDLAQG KSIDAKKKRK VSKKIEEVES  300
KTIEAGSESD GSGSGLASGS GGSSPISDLT FAEFAEEDTT TWDMCSENFM LQKFPSHEID  360
WASL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-22	185	243	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	285	290	KKKRKV

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	1e-101	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615540.1	1e-172	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	9e-83	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A1S4CIB7	1e-169	A0A1S4CIB7_TOBAC; ethylene-responsive transcription factor RAP2-4-like isoform X1
STRING	XP_009615540.1	1e-171	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1610	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	3e-50	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]