PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00152g00942.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

CAMTA

Protein Properties

Length: 215aa MW: 24015.4 Da PI: 6.3043

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00152g00942.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	145.5	1.4e-45	14	96	36	118
CG-1 36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+een +fqrr+yw+Le++l +iv+vhylevk Peaxi162Scf00152g00942.1 14 GGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENDNFQRRSYWMLEQDLMHIVFVHYLEVK 96 69******************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	62.493	1	101	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.5E-47	1	96	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.8E-38	14	95	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MANSGSDPTA FRLGGSVFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH 60 CYYAHGEEND NFQRRSYWML EQDLMHIVFV HYLEVKGNKA NISYTRSSEP AQSNSLDESS 120 SWDGLPRSQN LTSASPTSTL TLAHDEAESV DYTSIPSRGG GGNCADGSFT SGLQSTMDLG 180 SWEDVFEHCT RGGVSYKQDI QNTSSVQATW QAIND

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN558810	2e-89	JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485864.1	3e-80	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
Swissprot	Q6NPP4	6e-54	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1S4BAF3	6e-79	A0A1S4BAF3_TOBAC; calmodulin-binding transcription activator 2-like isoform X1
STRING	XP_009798947.1	2e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14489	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	5e-56	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]